Mir-15-P1b

MirGeneDB ID

Hsa-Mir-15-P1b

Family name

MIR-15 (all species)

Seed

AGCAGCA

Species

Human (Homo sapiens)

MiRBase ID

hsa-mir-15b

Paralogues

Hsa-Mir-15-P1a Hsa-Mir-15-P1c Hsa-Mir-15-P1d Hsa-Mir-15-P2a Hsa-Mir-15-P2b Hsa-Mir-15-P2c Hsa-Mir-15-P2d

Orthologues

Aca-Mir-15-P1b Ami-Mir-15-P1b Bta-Mir-15-P1b Cfa-Mir-15-P1b Cin-Mir-15-P1 Cli-Mir-15-P1b Cmi-Mir-15-P1b Cpi-Mir-15-P1b Cpo-Mir-15-P1b Dno-Mir-15-P1b Dre-Mir-15-P1b Ete-Mir-15-P1b Gga-Mir-15-P1b Gja-Mir-15-P1b Gmo-Mir-15-P1b Lch-Mir-15-P1b Loc-Mir-15-P1b Mal-Mir-15-P1b Mml-Mir-15-P1b Mmu-Mir-15-P1b Mun-Mir-15-P1b Oan-Mir-15-P1b Ocu-Mir-15-P1b Pbv-Mir-15-P1b Rno-Mir-15-P1b Sha-Mir-15-P1b Spt-Mir-15-P1b Sto-Mir-15-P1b Tgu-Mir-15-P1b Tni-Mir-15-P1b Xla-Mir-15-P1b1 Xla-Mir-15-P1b2 Xtr-Mir-15-P1b

Node of Origin (locus)

Gnathostomata

Node of Origin (family)

Olfactores

Genome context
(hg38)

chr3: 160404607-160404666 [+] UCSC Ensembl

Clustered miRNAs
(< 50kb from Mir-15-P1b)

Mir-15-P1b chr3: 160404607-160404666 [+] UCSC Ensembl
Mir-15-P2b chr3: 160404754-160404818 [+] UCSC Ensembl

Precursor
(pre-Mir +30nt flank)

AUCCUACAUUUUUGAGGCCUUAAAGUACUGUAGCAGCACAUCAUGGUUUACAUGCUACAGUCAAGAUGCGAAUCAUUAUUUGCUGCUCUAGAAAUUUAAGGAAAUUCAUUCAAAACUAUG

Get precursor sequence

Structure

        10          20        30        40        50         
AUCCUACAUUUUUGAGG--|      GUA   U       C  C      UA  UGCUAC 
                   CCUUAAA   CUG AGCAGCA AU AUGGUU  CA      A
                   GGAAUUU   GAU UCGUCGU UA UACUAA  GU      G
GUAUCAAAACUUACUUAAA^      AAA   C       U  U      GC  AGAACU 
.       110       100        90        80        70        60

Deep sequencing

Go to detailed chart

3' NTU

Motifs

Tissue expression

Ad	Ar	Bl	Bo	Bo	Bo	Bo	Bo	Br	Br	Br	Br	Br	Br	Br	Br	Br	Br	Br	Es	Ga	He	He	He	He	He	Ki	Li	Lu	Ly	Mu	Ne	Pa	Pl	Pl	Sk	Sp	Sp	St	Su	Te	Th	To	Tr	Ve

Mature sequence

Hsa-Mir-15-P1b_5p

mirBase accession

MIMAT0000417

Sequence

0- UAGCAGCACAUCAUGGUUUACA -22

Get sequence

Proposed targets

microrna.org: MIMAT0000417
TargetScanVert: hsa-miR-15b-5p
TargetMiner: hsa-miR-15b-5p
miRDB: MIMAT0000417

Star sequence

Hsa-Mir-15-P1b_3p*

mirBase accession

MIMAT0004586

Sequence

38- CGAAUCAUUAUUUGCUGCUCUA -60

Get sequence

Proposed targets

microrna.org: MIMAT0004586
TargetScanVert: hsa-miR-15b-3p
TargetMiner: hsa-miR-15b-3p
miRDB: MIMAT0004586