Mir-130-P2a

MirGeneDB ID

Hsa-Mir-130-P2a

Family name

MIR-130 (all species)

Seed

AGUGCAA

Species

Human (Homo sapiens)

MiRBase ID

hsa-mir-301b

Paralogues

Hsa-Mir-130-P1c Hsa-Mir-130-P2b Hsa-Mir-130-P3b Hsa-Mir-130-P4a

Orthologues

Aca-Mir-130-P2a Ami-Mir-130-P2a Bta-Mir-130-P2a Cfa-Mir-130-P2a Cli-Mir-130-P2a Cmi-Mir-130-P2a Cpi-Mir-130-P2a Cpo-Mir-130-P2a Dno-Mir-130-P2a Dre-Mir-130-P2a1 Dre-Mir-130-P2a2 Gga-Mir-130-P2a Gja-Mir-130-P2a Gmo-Mir-130-P2a1 Gmo-Mir-130-P2a2 Lch-Mir-130-P2a Loc-Mir-130-P2a Mal-Mir-130-P2a1 Mal-Mir-130-P2a2 Mml-Mir-130-P2a Mmu-Mir-130-P2a Mun-Mir-130-P2a Oan-Mir-130-P2a Ocu-Mir-130-P2a Pbv-Mir-130-P2a Rno-Mir-130-P2a Spt-Mir-130-P2a Sto-Mir-130-P2a Tgu-Mir-130-P2a Tni-Mir-130-P2a2 Xla-Mir-130-P2a3 Xla-Mir-130-P2a4 Xtr-Mir-130-P2a

Node of Origin (locus)

Gnathostomata

Node of Origin (family)

Vertebrata

Genome context
(hg38)

chr22: 21652990-21653049 [+] UCSC Ensembl

Clustered miRNAs
(< 50kb from Mir-130-P2a)

Mir-130-P2a chr22: 21652990-21653049 [+] UCSC Ensembl
Mir-130-P4a chr22: 21653316-21653375 [+] UCSC Ensembl

Precursor
(pre-Mir +30nt flank)

GUGGUGGGGUCCCCCCUGCUGGCCGCAGGUGCUCUGACGAGGUUGCACUACUGUGCUCUGAGAAGCAGUGCAAUGAUAUUGUCAAAGCAUCUGGGACCAGCCUUGGGGAUCUCCCUCCCU

Get precursor sequence

Structure

        10          20         30        40           50        
GUGGUGGGGUCCCCCCU--     -  G        C      G---|       A  GUGCU 
                   GCUGG CC CAGGUGCU UGACGA    GUUGCACU CU     \
                   CGACC GG GUCUACGA ACUGUU    UAACGUGA GA     C
UCCCUCCCUCUAGGGGUUC     A  -        A      AUAG^       C  AGAGU 
.       110       100         90        80        70        60

Deep sequencing

Go to detailed chart

3' NTU

Motifs

UG at 5p(-14), UGUG in loop

Tissue expression

Ad	Ar	Bl	Bo	Bo	Bo	Bo	Bo	Br	Br	Br	Br	Br	Br	Br	Br	Br	Br	Br	Es	Ga	He	He	He	He	He	Ki	Li	Lu	Ly	Mu	Ne	Pa	Pl	Pl	Sk	Sp	Sp	St	Su	Te	Th	To	Tr	Ve

Star sequence

Hsa-Mir-130-P2a_5p*

mirBase accession

MIMAT0032026

Sequence

0- GCUCUGACGAGGUUGCACUACU -22

Get sequence

Proposed targets

TargetScanVert: hsa-miR-301b-5p
miRDB: MIMAT0032026

Mature sequence

Hsa-Mir-130-P2a_3p

mirBase accession

MIMAT0004958

Sequence

35- CAGUGCAAUGAUAUUGUCAAAGCAU -60

Get sequence

Proposed targets

microrna.org: MIMAT0004958
TargetScanVert: hsa-miR-301b-3p
miRDB: MIMAT0004958