MirGeneDB 2.1
MirGeneDB ID

Cpo-Mir-130-P2a

Family name MIR-130 (all species)
Seed AGUGCAA
Species Guinea pig (Cavia porcellus)
MiRBase ID cpo-mir-301b
Paralogues Cpo-Mir-130-P1c  Cpo-Mir-130-P2b  Cpo-Mir-130-P3b  Cpo-Mir-130-P4a 
Orthologues Aca-Mir-130-P2a  Ami-Mir-130-P2a  Bta-Mir-130-P2a  Cfa-Mir-130-P2a  Cli-Mir-130-P2a  Cmi-Mir-130-P2a  Cpi-Mir-130-P2a  Dno-Mir-130-P2a  Dre-Mir-130-P2a1  Dre-Mir-130-P2a2  Gga-Mir-130-P2a  Gja-Mir-130-P2a  Gmo-Mir-130-P2a1  Gmo-Mir-130-P2a2  Hsa-Mir-130-P2a  Lch-Mir-130-P2a  Loc-Mir-130-P2a  Mal-Mir-130-P2a1  Mal-Mir-130-P2a2  Mml-Mir-130-P2a  Mmu-Mir-130-P2a  Mun-Mir-130-P2a  Oan-Mir-130-P2a  Ocu-Mir-130-P2a  Pbv-Mir-130-P2a  Rno-Mir-130-P2a  Spt-Mir-130-P2a  Sto-Mir-130-P2a  Tgu-Mir-130-P2a  Tni-Mir-130-P2a2  Xla-Mir-130-P2a3  Xla-Mir-130-P2a4  Xtr-Mir-130-P2a 
Node of Origin (locus) Gnathostomata
Node of Origin (family) Vertebrata
Genome context
(cavPor3)		 scaffold_4: 19664333-19664392 [+] UCSC
Clustered miRNAs
(< 50kb from Mir-130-P2a)		 Mir-130-P2a scaffold_4: 19664333-19664392 [+] UCSC
Mir-130-P4a scaffold_4: 19664670-19664729 [+] UCSC
Precursor
(pre-Mir +30nt flank)
CCUUCAUCCCUACUCCUGUUGGCUGCAGAAGCUCUGACGAGGUUGCACUACUGUGCUCUGAGAAGCAGUGCAAUGAUAUUGUCAAAGCAUCUGGGGCCAGCCUUGGGAAUGUUCCUCACC
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Structure
        10          20        30        40           50        
CCUUCAUCCCUACUCCU--       G    A   C      G---|       A  GUGCU 
                   GUUGGCU CAGA GCU UGACGA    GUUGCACU CU     \
                   CGACCGG GUCU CGA ACUGUU    UAACGUGA GA     C
CCACUCCUUGUAAGGGUUC       G    A   A      AUAG^       C  AGAGU 
.       110       100        90        80        70        60
Deep sequencing
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3' NTU No
MotifsUG at 5p(-14), UGUG in loop
Tissue expression
-   +
To
Star sequence

Cpo-Mir-130-P2a_5p*
mirBase accessionMIMAT0047144
Sequence 
0- GCUCUGACGAGGUUGCACUACU -22
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Mature sequence

Cpo-Mir-130-P2a_3p
mirBase accessionMIMAT0047145
Sequence 
35- CAGUGCAAUGAUAUUGUCAAAGCAU -60
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