Mir-1-P3

MirGeneDB ID

Hsa-Mir-1-P3

Family name

MIR-1 (all species)

Seed

GGAAUGU

Species

Human (Homo sapiens)

MiRBase ID

hsa-mir-1-1

Paralogues

Hsa-Mir-1-P1 Hsa-Mir-1-P2

Orthologues

Aae-Mir-1 Aca-Mir-1-P3 Ami-Mir-1-P3 Asu-Mir-1 Bfl-Mir-1 Bge-Mir-1 Bla-Mir-1 Bta-Mir-1-P3 Cbr-Mir-1 Cel-Mir-1 Cfa-Mir-1-P3 Cgi-Mir-1 Cin-Mir-1 Cli-Mir-1-P3 Cmi-Mir-1-P3 Cpi-Mir-1-P3 Cpo-Mir-1-P3 Cte-Mir-1 Dan-Mir-1 Dma-Mir-1 Dme-Mir-1 Dmo-Mir-1 Dno-Mir-1-P3 Dpu-Mir-1 Dre-Mir-1-P3 Dsi-Mir-1 Dya-Mir-1 Esc-Mir-1 Ete-Mir-1-P3 Gga-Mir-1-P3 Gja-Mir-1-P3 Gmo-Mir-1-P3 Hme-Mir-1 Isc-Mir-1 Lan-Mir-1 Lch-Mir-1-P3 Lgi-Mir-1 Loc-Mir-1-P3 Mal-Mir-1-P3 Mdo-Mir-1-P3 Mml-Mir-1-P3 Mmu-Mir-1-P3 Mun-Mir-1-P3 Oan-Mir-1-P3 Obi-Mir-1 Ocu-Mir-1-P3 Ovu-Mir-1 Pbv-Mir-1-P3 Pfl-Mir-1 Pma-Mir-1-o3 Pmi-Mir-1 Rno-Mir-1-P3 Sha-Mir-1-P3 Sko-Mir-1 Spt-Mir-1-P3 Spu-Mir-1 Sto-Mir-1-P3 Tca-Mir-1 Tgu-Mir-1-P3 Tni-Mir-1-P3 Xbo-Mir-1 Xla-Mir-1-P3a Xla-Mir-1-P3b Xtr-Mir-1-P3

Node of Origin (locus)

Gnathostomata

Node of Origin (family)

Bilateria

Genome context
(hg38)

chr20: 62554312-62554372 [+] UCSC Ensembl

Clustered miRNAs
(< 50kb from Mir-1-P3)

Mir-1-P3 chr20: 62554312-62554372 [+] UCSC Ensembl
Mir-133-P3-v1 chr20: 62564933-62564992 [+] UCSC Ensembl
Mir-133-P3-v2 chr20: 62564933-62564992 [+] UCSC Ensembl

Precursor
(pre-Mir +30nt flank)

GGAACUGCAUGCAGACUGCCUGCUUGGGAAACAUACUUCUUUAUAUGCCCAUAUGGACCUGCUAAGCUAUGGAAUGUAAAGAAGUAUGUAUCUCAGGCCGGGACCUCUCUCGCCGCACUGA

Get precursor sequence

Structure

        10          20        30        40        50        60
GGAACUGCAUGCAGACUG--| U        A                GC     UGGACC 
                    CC GCUUGGGA ACAUACUUCUUUAUAU  CCAUA      U
                    GG CGGACUCU UGUAUGAAGAAAUGUA  GGUAU      G
AGUCACGCCGCUCUCUCCAG^ C        A                A-     CGAAUC 
 .       110       100        90        80         70

Deep sequencing

Go to detailed chart

3' NTU

Motifs

UG at 5p(-14)

Tissue expression

Ad	Ar	Bl	Bo	Bo	Bo	Bo	Bo	Br	Br	Br	Br	Br	Br	Br	Br	Br	Br	Br	Es	Ga	He	He	He	He	He	Ki	Li	Lu	Ly	Mu	Ne	Pa	Pl	Pl	Sk	Sp	Sp	St	Su	Te	Th	To	Tr	Ve

Star sequence

Hsa-Mir-1-P3_5p*

mirBase accession

MIMAT0031892

Sequence

0- ACAUACUUCUUUAUAUGCCCAUA -23

Get sequence

Proposed targets

TargetScanVert: hsa-miR-1-5p
miRDB: MIMAT0031892

Mature sequence

Hsa-Mir-1-P3_3p

mirBase accession

MIMAT0000416

Sequence

39- UGGAAUGUAAAGAAGUAUGUAU -61

Get sequence

Proposed targets

microrna.org: MIMAT0000416
TargetScanVert: hsa-miR-1-3p
miRDB: MIMAT0000416