| MirGeneDB ID | Gja-Mir-17-P2c |
|---|---|
| Family name | MIR-17 (all species) |
| Seed | AAGGUGC |
| Species | Schlegels Japanese gecko (Gekko japonicus) |
| MiRBase ID | |
| Paralogues | Gja-Mir-17-P1a Gja-Mir-17-P1c Gja-Mir-17-P2a Gja-Mir-17-P4a Gja-Mir-17-P4c |
| Orthologues | Aca-Mir-17-P2c Ami-Mir-17-P2c Bta-Mir-17-P2c Cfa-Mir-17-P2c Cli-Mir-17-P2c Cmi-Mir-17-P2c Cpi-Mir-17-P2c Cpo-Mir-17-P2c Dno-Mir-17-P2c Dre-Mir-17-P2c Ete-Mir-17-P2c Gga-Mir-17-P2c Gmo-Mir-17-P2c Hsa-Mir-17-P2c Lch-Mir-17-P2c Loc-Mir-17-P2c Mdo-Mir-17-P2c Mml-Mir-17-P2c Mmu-Mir-17-P2c Mun-Mir-17-P2c Oan-Mir-17-P2c Ocu-Mir-17-P2c Pbv-Mir-17-P2c Rno-Mir-17-P2c Sha-Mir-17-P2c Spt-Mir-17-P2c Sto-Mir-17-P2c Tgu-Mir-17-P2c Xla-Mir-17-P2c3 Xla-Mir-17-P2c4 Xtr-Mir-17-P2c |
| Node of Origin (locus) | Gnathostomata |
| Node of Origin (family) | Vertebrata |
| Genome context (GCF_001447785.1_Gekko_japonicus) |
NW_015272222.1: 295-359 [+] |
| Precursor (pre-Mir +30nt flank) | UAAGGUGCAUCUAGUGCAGUUAGUGAAGUAGCUUAGAAUCUACUGCCCUGAAUGCUCCUUCUGGCGet precursor sequence |
| Structure | 10 20 30 U----| U C U UA GAAGUA AAGG GCAU UAG GCAGU GU \ UUCC CGUA GUC CGUCA UA G CGGUC^ U A C UC AGAUUC 60 50 40 |
| Deep sequencing | |
| 3' NTU | Unknown |
| Motifs | No |
| Mature sequence | Gja-Mir-17-P2c_5p |
| mirBase accession | None |
| Sequence |
0- UAAGGUGCAUCUAGUGCAGUUAG -23
Get sequence
|
| Star sequence | Gja-Mir-17-P2c_3p* |
| mirBase accession | None |
| Sequence |
40- UACUGCCCUGAAUGCUCCUUCUGGC -65
Get sequence
|
