MirGeneDB 2.1
MirGeneDB ID

Gja-Mir-17-P4c

Family name MIR-17 (all species)
Seed AAAGUGC
Species Schlegels Japanese gecko (Gekko japonicus)
MiRBase ID
Paralogues Gja-Mir-17-P1a  Gja-Mir-17-P1c  Gja-Mir-17-P2a  Gja-Mir-17-P2c  Gja-Mir-17-P4a 
Orthologues Aca-Mir-17-P4c  Ami-Mir-17-P4c  Bta-Mir-17-P4c  Cfa-Mir-17-P4c  Cli-Mir-17-P4c  Cmi-Mir-17-P4c  Cpi-Mir-17-P4c  Cpo-Mir-17-P4c  Dno-Mir-17-P4c  Dre-Mir-17-P4c  Ete-Mir-17-P4c  Gga-Mir-17-P4c  Gmo-Mir-17-P4c  Hsa-Mir-17-P4c  Lch-Mir-17-P4c  Loc-Mir-17-P4c  Mal-Mir-17-P4c  Mdo-Mir-17-P4c  Mml-Mir-17-P4c  Mmu-Mir-17-P4c  Oan-Mir-17-P4c  Ocu-Mir-17-P4c  Pbv-Mir-17-P4c  Rno-Mir-17-P4c  Sha-Mir-17-P4c  Spt-Mir-17-P4c  Sto-Mir-17-P4c  Tgu-Mir-17-P4c  Xla-Mir-17-P4c3  Xla-Mir-17-P4c4  Xtr-Mir-17-P4c 
Node of Origin (locus) Gnathostomata
Node of Origin (family) Vertebrata
Genome context
(GCF_001447785.1_Gekko_japonicus)		 NW_015169856.1: 119534-119595 [-]
Precursor
(pre-Mir +30nt flank)
UUCGUCAUACUUGCCUUGUCCUUGCAGUAGCAAAGUGCUCAUAGUGCAGGUAGUUGUUCACCCAAAUCUACUGUAAUAUGGGCACUUACAGUACUGCUGGAUCCAAAAGCACCUUGCUGUCC
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Structure
        10           20        30         40        50        60
UUCGUCAUACUUGCCUU---|   UU      GCA-           G     G   UUGUUC 
                    GUCC  GCAGUA    AAGUGCUCAUA UGCAG UAG      A
                    UAGG  CGUCAU    UUCACGGGUAU AUGUC AUC      C
CCUGUCGUUCCACGAAAACC^   U-      GACA           A     -   UAAACC 
120       110       100         90        80         70
Deep sequencing
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CommentThere is a second Dicer cut +2 on the 3p arm.
3' NTU Unknown
MotifsUG at 5p(-14), CNNC at 3p(+17)
Tissue expression
-   +
To
Mature sequence

Gja-Mir-17-P4c_5p
mirBase accessionNone
Sequence 
0- CAAAGUGCUCAUAGUGCAGGUAG -23
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Star sequence

Gja-Mir-17-P4c_3p*
mirBase accessionNone
Sequence 
39- ACUGUAAUAUGGGCACUUACAGU -62
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