Mir-17-P2c

MirGeneDB ID

Aca-Mir-17-P2c

Family name

MIR-17 (all species)

Seed

AAGGUGC

Species

Green anole lizard (Anolis carolinensis)

MiRBase ID

aca-mir-18b

Paralogues

Aca-Mir-17-P1a Aca-Mir-17-P1c Aca-Mir-17-P2a Aca-Mir-17-P4a Aca-Mir-17-P4c

Orthologues

Ami-Mir-17-P2c Bta-Mir-17-P2c Cfa-Mir-17-P2c Cli-Mir-17-P2c Cmi-Mir-17-P2c Cpi-Mir-17-P2c Cpo-Mir-17-P2c Dno-Mir-17-P2c Dre-Mir-17-P2c Ete-Mir-17-P2c Gga-Mir-17-P2c Gja-Mir-17-P2c Gmo-Mir-17-P2c Hsa-Mir-17-P2c Lch-Mir-17-P2c Loc-Mir-17-P2c Mdo-Mir-17-P2c Mml-Mir-17-P2c Mmu-Mir-17-P2c Mun-Mir-17-P2c Oan-Mir-17-P2c Ocu-Mir-17-P2c Pbv-Mir-17-P2c Rno-Mir-17-P2c Sha-Mir-17-P2c Spt-Mir-17-P2c Sto-Mir-17-P2c Tgu-Mir-17-P2c Xla-Mir-17-P2c3 Xla-Mir-17-P2c4 Xtr-Mir-17-P2c

Node of Origin (locus)

Gnathostomata

Node of Origin (family)

Vertebrata

Genome context
(anoCar2)

GL344214.1: 22479-22543 [+] UCSC Ensembl

Clustered miRNAs
(< 50kb from Mir-17-P2c)

Mir-17-P2c GL344214.1: 22479-22543 [+] UCSC Ensembl
Mir-17-P4c GL344214.1: 24042-24104 [+] UCSC Ensembl
Mir-92-P1c GL344214.1: 24446-24508 [+] UCSC Ensembl
Mir-92-P2c GL344214.1: 24606-24670 [+] UCSC Ensembl

Precursor
(pre-Mir +30nt flank)

UCCCGACUCCUUCGAAACAGCUUCCUGUGCUAAGGUGCAUCUAGUGCAGUUAGUGAAGUAGCUUAGAAUCUACUGCCCUGAAUGCUCCUUCUGGCAUAGGAGGCCGGAGCCGAACCACAGGUCGC

Get precursor sequence

Structure

        10          20        30          40        50        60 
UCCCGACUCCUUCGAAACA--             --|  U    C   U     U  UGAAGUA 
                     GCUUCCUGUGCUA  AGG GCAU UAG GCAGU AG       G
                     CGGAGGAUACGGU  UCC CGUA GUC CGUCA UC       C
CGCUGGACACCAAGCCGAGGC             CU^  U    A   C     -  UAAGAUU 
   120       110       100        90        80         70