Mir-2970

MirGeneDB ID

Gga-Mir-2970

Family name

MIR-2970 (all species)

Seed

ACAGUCA

Species

Chicken (Gallus gallus)

MiRBase ID

Paralogues

Orthologues

Aca-Mir-2970 Ami-Mir-2970 Cli-Mir-2970 Cpi-Mir-2970 Gja-Mir-2970 Lch-Mir-2970 Mdo-Mir-2970 Mun-Mir-2970 Oan-Mir-2970 Pbv-Mir-2970 Sha-Mir-2970 Spt-Mir-2970 Tgu-Mir-2970 Xla-Mir-2970-P1 Xla-Mir-2970-P2 Xtr-Mir-2970

Node of Origin (locus)

Sarcopterygii

Node of Origin (family)

Sarcopterygii

Genome context
(Gallus_gallus.GRCg6a)

12: 12045916-12045973 [+] UCSC Ensembl

Precursor
(pre-Mir +30nt flank)

GCGGGGGUCCCGGGCGGCUCCUGCCCUGCGGACAGUCAGCAGUUGGUCUGUGUGAGCAGCCGUUCUCAGAUCACCUCUUGGCUGUGGGUGGUGCAGGGAGCACCCCACCUCGGGGGCU

Get precursor sequence

Structure

        10          20        30        40        50        
GCGGGGGUCCCGGGCGGC--|     C UG GG        C  U       UGUGAGC 
                    UCCUGC C  C  ACAGUCAG AG UGGUCUG       A
                    GGGACG G  G  UGUCGGUU UC ACUAGAC       G
UCGGGGGCUCCACCCCACGA^     U GU GG        C  C       UCUUGCC 
      110       100        90        80        70        60

Deep sequencing

Go to detailed chart

3' NTU

Motifs

CNNC at 3p(+17)

Tissue expression

Ad	Ad	Ad	Br	Br	Ce	Ce	Ce	Ce	Ch	He	He	Hy	Hy	Ki	Ki	Li	Li	Lu	Lu	Ov	Pr	Pr	Sc	Sc	Sp	Sp	Te

Mature sequence

Gga-Mir-2970_5p

mirBase accession

None

Sequence

0- GACAGUCAGCAGUUGGUCUGUG -22

Get sequence

Star sequence

Gga-Mir-2970_3p*

mirBase accession

None

Sequence

36- CAGAUCACCUCUUGGCUGUGGG -58

Get sequence