| MirGeneDB ID | Dya-Mir-962 |
|---|
| Family name |
MIR-962 (all species) |
|---|
| Seed |
UAAGGUA |
|---|
| Species |
Fruit fly (Drosophila yakuba) |
|---|
| MiRBase ID |
|
|---|
| Paralogues |
|
|---|
| Orthologues |
Dan-Mir-962
Dme-Mir-962
Dmo-Mir-962
Dsi-Mir-962
|
|---|
| Node of Origin (locus) |
Drosophila
|
|---|
| Node of Origin (family) |
Drosophila
|
|---|
Genome context
(Drosophila_yakuba.dyak_caf1.dna.toplevel) |
2L: 13551941-13552000 [-]
UCSC
Ensembl
|
|---|
Precursor
(pre-Mir +30nt flank) |
AUCCAACCAACUUCAUGGGGCACACAAGCUAUAAGGUAGAGAAAUUGUUGUCUUCCACACUAUUCAGACAUCAGUUUAACUAUCUUUCAAUUUGUUUGCCCCCACGCAACAGUGAUAAUG
Get precursor sequence
|
|---|
| Structure | 10 20 30 40 50
AUCCAACCAACUUCAUG--| C CUAU AG U UUCCAC
GGGCA ACAAG AAGGUAG AAAUUG UGUC A
CCCGU UGUUU UUCUAUC UUUGAC ACAG C
GUAAUAGUGACAACGCACC^ U AACU AA U ACUUAU
. 110 100 90 80 70 60 |
|---|
| Deep sequencing |
Go to detailed chart
|
|---|
| 3' NTU |
Unknown
|
|---|
| Motifs | CNNC at 3p(+17) |
|---|
Tissue expression
|
|
|---|
| Mature sequence |
Dya-Mir-962_5p |
| mirBase accession | None |
|---|
| Sequence |
0- AUAAGGUAGAGAAAUUGUUGUC -22
Get sequence
|
|---|
| Star sequence |
Dya-Mir-962_3p* (predicted) |
| mirBase accession | None |
|---|
| Sequence |
38- CAUCAGUUUAACUAUCUUUCAA -60
Get sequence
|
|---|
