| MirGeneDB ID | Dan-Mir-962 |
|---|
| Family name |
MIR-962 (all species) |
|---|
| Seed |
UAAGGUA |
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| Species |
Fruit fly (Drosophila ananassae) |
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| MiRBase ID |
|
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| Paralogues |
|
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| Orthologues |
Dme-Mir-962
Dmo-Mir-962
Dsi-Mir-962
Dya-Mir-962
|
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| Node of Origin (locus) |
Drosophila
|
|---|
| Node of Origin (family) |
Drosophila
|
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Genome context
(Dana_caf1) |
scaffold_12916: 11085121-11085180 [+]
Ensembl
|
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Precursor
(pre-Mir +30nt flank) |
CCCAACCACCUGGCCGAGGGCACUCAAGCUAUAAGGUAGAGAAAAUAAUGUCUUCGUCUCCAAAUAGACAUCAAUUUCCCUAGCUUGCAUUUUGCCUGCCCCCAAGCAACAAUGAUAACA
Get precursor sequence
|
|---|
| Structure | 10 20 30 40 50
CCCAACCACCUGGCCGA--| CU CUA G A AUA UCGUC
GGGCA CAAG UAAG UAG GAAA AUGUCU U
CCCGU GUUU GUUC AUC CUUU UACAGA C
ACAAUAGUAACAACGAACC^ CC UAC G C AAC UAAAC
. 110 100 90 80 70 60 |
|---|
| Deep sequencing |
Go to detailed chart
|
|---|
| 3' NTU |
No
|
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| Motifs | CNNC at 3p(+17) |
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Tissue expression
|
|
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| Mature sequence |
Dan-Mir-962_5p |
| mirBase accession | None |
|---|
| Sequence |
0- AUAAGGUAGAGAAAAUAAUGUCU -23
Get sequence
|
|---|
| Star sequence |
Dan-Mir-962_3p* |
| mirBase accession | None |
|---|
| Sequence |
38- CAUCAAUUUCCCUAGCUUGCAU -60
Get sequence
|
|---|
