| MirGeneDB ID | Dya-Mir-960 |
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| Family name |
MIR-960 (all species) |
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| Seed |
GAGUAUU |
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| Species |
Fruit fly (Drosophila yakuba) |
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| MiRBase ID |
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| Paralogues |
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| Orthologues |
Dan-Mir-960
Dme-Mir-960
Dmo-Mir-960
Dsi-Mir-960
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| Node of Origin (locus) |
Drosophila
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| Node of Origin (family) |
Drosophila
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Genome context
(Drosophila_yakuba.dyak_caf1.dna.toplevel) |
2L: 13552167-13552226 [-]
UCSC
Ensembl
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Precursor
(pre-Mir +30nt flank) |
CGCUUCGCCCGCGUGUUUUGUACCAGAUUCUGAGUAUUCCUGAUUGCAUAGCUUUGGCCUUUGAUUGCUAUACGGUCUGGGACACUUUUAACGUGGUAUCAAAUCUGAUUCAACCGAAGG
Get precursor sequence
|
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| Structure | 10 20 30 40 50
CGCUUCGCCCGCGUGUU- -| GA CU A U C UUUGGC
UUG UACCA UU GAGU UUCC GAUUG AUAGC C
AAC AUGGU AA UUCA AGGG CUGGC UAUCG U
GGAAGCCAACUUAGUCUA U^ GC UU C U A UUAGUU
. 110 100 90 80 70 60 |
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| Deep sequencing |
Go to detailed chart
|
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| Comment | There is a second Dicer cut -2 on the 3p arm, and -1 on the 5p arm,. |
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| 3' NTU |
No
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| Motifs | No |
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Tissue expression
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| Mature sequence |
Dya-Mir-960_5p |
| mirBase accession | None |
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| Sequence |
0- UGAGUAUUCCUGAUUGCAUAGC -22
Get sequence
|
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| Star sequence |
Dya-Mir-960_3p* |
| mirBase accession | None |
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| Sequence |
38- UAUACGGUCUGGGACACUUUUA -60
Get sequence
|
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