| MirGeneDB ID | Dan-Mir-960 |
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| Family name |
MIR-960 (all species) |
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| Seed |
GAGUAUU |
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| Species |
Fruit fly (Drosophila ananassae) |
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| MiRBase ID |
|
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| Paralogues |
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| Orthologues |
Dme-Mir-960
Dmo-Mir-960
Dsi-Mir-960
Dya-Mir-960
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| Node of Origin (locus) |
Drosophila
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| Node of Origin (family) |
Drosophila
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Genome context
(Dana_caf1) |
scaffold_12916: 11084881-11084940 [+]
Ensembl
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Precursor
(pre-Mir +30nt flank) |
ACCAAUCAAUAUGAGUUUUGUGCCAGAUUCUGAGUAUUCCUGAUUGCAUAGCUCUGUGUUGUGACUGCUAUACGGUCUGGGACACUUCUAACAUGGCAUCAAAUCUGUGUCAACGGCAGC
Get precursor sequence
|
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| Structure | 10 20 30 40 50
ACCAAUCAAUAUGAGUU- -| GA CU A U C UCUGUG
UUG UGCCA UU GAGU UUCC GAUUG AUAGC U
AAC ACGGU AA UUCA AGGG CUGGC UAUCG U
CGACGGCAACUGUGUCUA U^ AC UC C U A UCAGUG
. 110 100 90 80 70 60 |
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| Deep sequencing |
Go to detailed chart
|
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| Comment | There is a second Dicer cut -2 on the 3p arm. |
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| 3' NTU |
No
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| Motifs | No |
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Tissue expression
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|
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| Mature sequence |
Dan-Mir-960_5p |
| mirBase accession | None |
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| Sequence |
0- UGAGUAUUCCUGAUUGCAUAGC -22
Get sequence
|
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| Star sequence |
Dan-Mir-960_3p* |
| mirBase accession | None |
|---|
| Sequence |
38- UAUACGGUCUGGGACACUUCUA -60
Get sequence
|
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