| MirGeneDB ID | Dpu-Mir-92-o47 |
|---|
| Family name |
MIR-92 (all species) |
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| Seed |
AUUGCAC |
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| Species |
Common water flea (Daphnia pulex) |
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| MiRBase ID |
dpu-mir-92
|
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| Paralogues |
Dpu-Mir-92-o46
|
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| Orthologues |
Asu-Mir-92
Cel-Mir-92
Dma-Mir-92-o47
Esc-Mir-92
Isc-Mir-92
Obi-Mir-92
Sme-Mir-92
|
|---|
| Node of Origin (locus) |
Daphnia
|
|---|
| Node of Origin (family) |
Bilateria
|
|---|
Genome context
(Daphnia_pulex.V1.0) |
DAPPUscaffold_38: 876332-876391 [+]
Ensembl
|
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Precursor
(pre-Mir +30nt flank) |
ACCAAUUCACCUUGAUAGUCAACCUUAUGAAGGCUUUGACUUGGGCAACUUCGUUUAAAUGUUUGUCGAAUUGCACUCGUCCCGGCCUGCUUAACUGGACUAAAAAAACUUCAUAUGAUA
Get precursor sequence
|
|---|
| Structure | 10 20 30 40 50
ACCAAUUCACCUUGAUA---| AACC UGA UU UUGG C UUUAAA
GUC UUA AGGCU GAC GCAA UUCG \
CAG AAU UCCGG CUG CGUU AAGC U
AUAGUAUACUUCAAAAAAAU^ GUC- UCG CC CUCA - UGUUUG
. 110 100 90 80 70 |
|---|
| Deep sequencing |
Go to detailed chart
|
|---|
| Comment | It is not clear either from phylogenetic or syntenic information how many Mir-92 genes were present in the last common ancestor of bilaterians and how the vertebrate Mir-92s relate to the invertebrate Mir-92s and thus these multiple paralogues in invertebrates are classified here as orphans pending additional data. |
|---|
| 3' NTU |
No
|
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| Motifs | No |
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Tissue expression
|
|
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| Star sequence |
Dpu-Mir-92-o47_5p* |
| mirBase accession | None |
|---|
| Sequence |
0- AGGCUUUGACUUGGGCAACUUCG -23
Get sequence
|
|---|
| Mature sequence |
Dpu-Mir-92-o47_3p |
| mirBase accession | MIMAT0012672 |
|---|
| Sequence |
38- AAUUGCACUCGUCCCGGCCUGC -60
Get sequence
|
|---|
