| MirGeneDB ID | Dpu-Mir-92-o46 |
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| Family name |
MIR-92 (all species) |
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| Seed |
AUUGCAC |
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| Species |
Common water flea (Daphnia pulex) |
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| MiRBase ID |
|
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| Paralogues |
Dpu-Mir-92-o47
|
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| Orthologues |
Asu-Mir-92
Cel-Mir-92
Dma-Mir-92-o46
Esc-Mir-92
Isc-Mir-92
Obi-Mir-92
Sme-Mir-92
|
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| Node of Origin (locus) |
Daphnia
|
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| Node of Origin (family) |
Bilateria
|
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Genome context
(Daphnia_pulex.V1.0) |
DAPPUscaffold_38: 876143-876215 [+]
Ensembl
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Precursor
(pre-Mir +30nt flank) |
AAAGACUGCAUGUUAUUUGAUACGAAGGGUAGGCUUUGACUGGUGGCAAUUUUUCAUCUAUGCCUCGAAAUAUGGCAGAAAUAUUGCACUCGUCCCGGCCUGUCUUUUGUAUUCACAUUCGACGAUAUGUAAC
Get precursor sequence
|
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| Structure | 10 20 30 40 50 60
AAAGACUGCAUGUUAUUU--| GU UU U G UUUUCAUCUAUGCCU
GAUACGAAGG AGGCU GAC GGUG CAAU C
UUAUGUUUUC UCCGG CUG UCAC GUUA G
CAAUGUAUAGCAGCUUACAC^ UG CC C - UAAAGACGGUAUAAA
130 120 110 100 90 80 70 |
|---|
| Deep sequencing |
Go to detailed chart
|
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| Comment | It is not clear either from phylogenetic or syntenic information how many Mir-92 genes were present in the last common ancestor of bilaterians and how the vertebrate Mir-92s relate to the invertebrate Mir-92s and thus these multiple paralogues in invertebrates are classified here as orphans pending additional data. |
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| 3' NTU |
No
|
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| Motifs | CNNC at 3p(+17) |
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Tissue expression
|
|
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| Star sequence |
Dpu-Mir-92-o46_5p* (predicted) |
| mirBase accession | None |
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| Sequence |
0- AGGCUUUGACUGGUGGCAAUUU -22
Get sequence
|
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| Mature sequence |
Dpu-Mir-92-o46_3p |
| mirBase accession | None |
|---|
| Sequence |
51- UAUUGCACUCGUCCCGGCCUGU -73
Get sequence
|
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