| MirGeneDB ID | Dma-Mir-92-o47 |
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| Family name |
MIR-92 (all species) |
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| Seed |
AUUGCAC |
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| Species |
Large common water flea (Daphnia magna) |
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| MiRBase ID |
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| Paralogues |
Dma-Mir-92-o46
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| Orthologues |
Asu-Mir-92
Cel-Mir-92
Dpu-Mir-92-o47
Esc-Mir-92
Isc-Mir-92
Obi-Mir-92
Sme-Mir-92
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| Node of Origin (locus) |
Daphnia
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| Node of Origin (family) |
Bilateria
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Genome context
(DMA_ASM399081) |
NC_046181.1: 7370498-7370557 [-]
Ensembl
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Precursor
(pre-Mir +30nt flank) |
AACUCCCCUUCGUGCAAGUCAGCUUUAUGAAGGCUUAGGCAAGAGCAACUUCGUUCAUAUAUGCAUCGAAUUGCACUCGUCCCGGCCUGCUUAACUGGACUAACAAAACUUCACAAUUUU
Get precursor sequence
|
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| Structure | 10 20 30 40 50
AACUCCCCUUCGUGCAA---| AGCU UGA UA A A C UUCAUA
GUC UUA AGGCU GGC AG GCAA UUCG \
CAG AAU UCCGG CUG UC CGUU AAGC U
UUUUAACACUUCAAAACAAU^ GUC- UCG CC C A - UACGUA
. 110 100 90 80 70 |
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| Deep sequencing |
Go to detailed chart
|
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| Comment | It is not clear either from phylogenetic or syntenic information how many Mir-92 genes were present in the last common ancestor of bilaterians and how the vertebrate Mir-92s relate to the invertebrate Mir-92s and thus these multiple paralogues in invertebrates are classified here as orphans pending additional data. |
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| 3' NTU |
No
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| Motifs | No |
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Tissue expression
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| Star sequence |
Dma-Mir-92-o47_5p* |
| mirBase accession | None |
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| Sequence |
0- AGGCUUAGGCAAGAGCAACUUCG -23
Get sequence
|
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| Mature sequence |
Dma-Mir-92-o47_3p |
| mirBase accession | None |
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| Sequence |
38- AAUUGCACUCGUCCCGGCCUGC -60
Get sequence
|
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