MirGeneDB 2.1
MirGeneDB ID

Dma-Mir-10-P4

Family name MIR-10 (all species)
Seed UACCCUG
Species Large common water flea (Daphnia magna)
MiRBase ID
Paralogues Dma-Mir-10-P1-v1  Dma-Mir-10-P1-v2  Dma-Mir-10-P2  Dma-Mir-10-P3 
Orthologues Aae-Mir-10-P4  Asu-Mir-10-P4  Bge-Mir-10-P4  Bpl-Mir-10-P4  Csc-Mir-10-P4q  Csc-Mir-10-P4r  Cte-Mir-10-P4  Dan-Mir-10-P4  Dme-Mir-10-P4  Dmo-Mir-10-P4  Dpu-Mir-10-P4  Dsi-Mir-10-P4  Dya-Mir-10-P4  Efe-Mir-10-P4a  Efe-Mir-10-P4b  Efe-Mir-10-P4c  Hme-Mir-10-P4  Isc-Mir-10-P4  Lan-Mir-10-P4d  Lan-Mir-10-P4e  Lpo-Mir-10-P4j  Lpo-Mir-10-P4k  Lpo-Mir-10-P4l  Lpo-Mir-10-P4m  Lpo-Mir-10-P4n  Nve-Mir-10  Tca-Mir-10-P4 
Node of Origin (locus) Protostomia
Node of Origin (family) Eumetazoa
Genome context
(DMA_ASM399081)		 LRGB01000810.1: 3483-3547 [+] Ensembl
Precursor
(pre-Mir +30nt flank)
CCAUUCUAUUUCAACAGCCGGAUUCGUAACCUACCCUGUAGCUCCGGGCUUUUGUUUCGUUUCUAGUAAUCAGAAGCUCGUUUCUACAGGUAUCUUACGGGUAAAGAAAAAAAAAAAAGAGGAUA
Get precursor sequence
Structure
        10        20          30        40        50        60  
CCAUUCUAUUUCAACAGCCGG--|       CC    C     CUC          UUUCGUU 
                       AUUCGUAA  UACC UGUAG   CGGGCUUUUG       U
                       UGGGCAUU  AUGG ACAUC   GCUCGAAGAC       C
AUAGGAGAAAAAAAAAAAAGAAA^       CU    -     UUU          UAAUGAU 
   120       110       100        90         80        70
Deep sequencing
Go to detailed chart
CommentNot in assembly but in trace archive.
3' NTU No
MotifsNo
Tissue expression
-   +
01 02 03 04 05 06 07 08 09 10 11 12 13 14
Mature sequence

Dma-Mir-10-P4_5p
mirBase accessionNone
Sequence 
0- CUACCCUGUAGCUCCGGGCUUUUG -24
Get sequence
Star sequence

Dma-Mir-10-P4_3p*
mirBase accessionNone
Sequence 
42- GAAGCUCGUUUCUACAGGUAUCU -65
Get sequence