| MirGeneDB ID | Dan-Mir-959-v1 |
|---|
| Family name |
MIR-959 (all species) |
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| Seed |
UGUCAUC |
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| Species |
Fruit fly (Drosophila ananassae) |
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| MiRBase ID |
|
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| Paralogues |
Dan-Mir-959-v2
|
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| Orthologues |
Dme-Mir-959-v1
Dsi-Mir-959-v1
Dya-Mir-959-v1
|
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| Node of Origin (locus) |
D. melanogaster group
|
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| Node of Origin (family) |
D. melanogaster group
|
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Genome context
(Dana_caf1) |
scaffold_12916: 11084735-11084797 [+]
Ensembl
|
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Precursor
(pre-Mir +30nt flank) |
GUUAAAUUUAUUUCAAUUUUGUUCUAUAUUCUUAGUACUCGGGUUGAUAAAGACCUUUCCUGGAGCCGCCUUUGUCAUCGGGGGUAUUAUGAAAUAUAGCUCAAAAAACCAGCACAAUGUAUC
Get precursor sequence
|
|---|
| Structure | 10 20 30 40 50 60
GUUAAAUUUAUUUCAAU- UU -| U GGGU ACCUUUCC
UUUG CUAUA UUC UAGUACUC UGAUAAAG \
AAAC GAUAU AAG AUUAUGGG ACUGUUUC U
CUAUGUAACACGACCAAA UC A^ U GGCU CGCCGAGG
120 110 100 90 80 70 |
|---|
| Deep sequencing |
Go to detailed chart
|
|---|
| 3' NTU |
No
|
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| Motifs | CNNC at 3p(+17) |
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Tissue expression
|
|
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| Star sequence |
Dan-Mir-959-v1_5p* |
| mirBase accession | None |
|---|
| Sequence |
0- CUUAGUACUCGGGUUGAUAAAG -22
Get sequence
|
|---|
| Mature sequence |
Dan-Mir-959-v1_3p |
| mirBase accession | None |
|---|
| Sequence |
41- UUGUCAUCGGGGGUAUUAUGAA -63
Get sequence
|
|---|
