Mir-92-o38

MirGeneDB ID

Cte-Mir-92-o38

Family name

MIR-92 (all species)

Seed

AUUGCAC

Species

Polychaete worm (Capitella teleta)

MiRBase ID

cte-mir-92c

Paralogues

Cte-Mir-92-o36 Cte-Mir-92-o37

Orthologues

Asu-Mir-92 Cel-Mir-92 Esc-Mir-92 Isc-Mir-92 Obi-Mir-92 Sme-Mir-92

Node of Origin (locus)

C. teleta

Node of Origin (family)

Bilateria

Genome context
(Capitella_teleta_v1.0)

CAPTEscaffold_14: 594225-594286 [-] Ensembl

Clustered miRNAs
(< 50kb from Mir-92-o38)

Mir-92-o38 CAPTEscaffold_14: 594225-594286 [-] Ensembl
Mir-92-o37 CAPTEscaffold_14: 594348-594403 [-] Ensembl
Mir-92-o36 CAPTEscaffold_14: 595238-595297 [-] Ensembl

Precursor
(pre-Mir +30nt flank)

GCGACUCUCUUAUUAUUACGUCAGUGAAGGAGGUCGUGACAAGCGGCAAUCCUGGUCUGGCUGAUGCUCCAAUUGCACUUGUCCCGGCCUGCUCAGACUGACCUCUCACGUCAUUGCCAUCG

Get precursor sequence

Structure

        10         20         30        40        50        60 
GCGACUCUCUUAUUAUUAC-      GA-| G      U      CG     CCUGGUCUGG 
                    GUCAGU   AG AGGUCG GACAAG  GCAAU          \
                    CAGUCA   UC UCCGGC CUGUUC  CGUUA          C
GCUACCGUUACUGCACUCUC      GAC^ G      C      A-     ACCUCGUAGU 
120       110       100        90        80         70

Deep sequencing

Go to detailed chart

Comment

It is not clear either from phylogenetic or syntenic information how many Mir-92 genes were present in the last common ancestor of bilaterians and how the vertebrate Mir-92s relate to the invertebrate Mir-92s and thus these multiple paralogues in invertebrates are classified here as orphans pending additional data.

3' NTU

Motifs

CNNC at 3p(+17)

Tissue expression

To

Star sequence

Cte-Mir-92-o38_5p* (predicted)

mirBase accession

None

Sequence

0- AGGUCGUGACAAGCGGCAAUCC -22

Get sequence

Mature sequence

Cte-Mir-92-o38_3p

mirBase accession

MIMAT0009522

Sequence

40- AAUUGCACUUGUCCCGGCCUGC -62

Get sequence