Mir-92-o37

MirGeneDB ID

Cte-Mir-92-o37

Family name

MIR-92 (all species)

Seed

AUUGCAC

Species

Polychaete worm (Capitella teleta)

MiRBase ID

cte-mir-92a

Paralogues

Cte-Mir-92-o36 Cte-Mir-92-o38

Orthologues

Asu-Mir-92 Cel-Mir-92 Esc-Mir-92 Isc-Mir-92 Obi-Mir-92 Sme-Mir-92

Node of Origin (locus)

C. teleta

Node of Origin (family)

Bilateria

Genome context
(Capitella_teleta_v1.0)

CAPTEscaffold_14: 594348-594403 [-] Ensembl

Clustered miRNAs
(< 50kb from Mir-92-o37)

Mir-92-o38 CAPTEscaffold_14: 594225-594286 [-] Ensembl
Mir-92-o37 CAPTEscaffold_14: 594348-594403 [-] Ensembl
Mir-92-o36 CAPTEscaffold_14: 595238-595297 [-] Ensembl

Precursor
(pre-Mir +30nt flank)

GCUUUUUCGUGCGUGUUGCUCGGUGCCAGAAGGUCGAGAUUGGCGCAAUGCUGUCGUCCAUCCAGAUUGCACUAGUCCCGGCCUUCUGGCUCUGCUGCUCGUCUUCAUCUCGCCUC

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Structure

        10         20         30        40        50        
GCUUUUUCGUGCGUGUU-  U-|  U            A      C     G   UCGU 
                  GC  CGG GCCAGAAGGUCG GAUUGG GCAAU CUG    \
                  CG  GUC CGGUCUUCCGGC CUGAUC CGUUA GAC    C
CUCCGCUCUACUUCUGCU  UC^  U            C      A     -   CUAC 
    110       100        90        80        70         60

Deep sequencing

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Comment

It is not clear either from phylogenetic or syntenic information how many Mir-92 genes were present in the last common ancestor of bilaterians and how the vertebrate Mir-92s relate to the invertebrate Mir-92s and thus these multiple paralogues in invertebrates are classified here as orphans pending additional data.

3' NTU

Motifs

UG at 5p(-14), CNNC at 3p(+17)

Tissue expression

To

Star sequence

Cte-Mir-92-o37_5p*

mirBase accession

None

Sequence

0- AGGUCGAGAUUGGCGCAAUGCUG -23

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Mature sequence

Cte-Mir-92-o37_3p

mirBase accession

MIMAT0009520

Sequence

34- GAUUGCACUAGUCCCGGCCUUC -56

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