Mir-279-o13

MirGeneDB ID

Cte-Mir-279-o13

Family name

MIR-279 (all species)

Seed

GACUAGA

Species

Polychaete worm (Capitella teleta)

MiRBase ID

cte-mir-2720

Paralogues

Cte-Mir-279-o11 Cte-Mir-279-o12

Orthologues

Bpl-Mir-279 Cgi-Mir-279 Esc-Mir-279 Isc-Mir-279 Lgi-Mir-279 Lpo-Mir-279-P13 Npo-Mir-279 Obi-Mir-279 Ovu-Mir-279

Node of Origin (locus)

C. teleta

Node of Origin (family)

Protostomia

Genome context
(Capitella_teleta_v1.0)

CAPTEscaffold_39: 146223-146291 [+] Ensembl

Clustered miRNAs
(< 50kb from Mir-279-o13)

Mir-279-o12 CAPTEscaffold_39: 146002-146056 [+] Ensembl
Mir-279-o13 CAPTEscaffold_39: 146223-146291 [+] Ensembl

Precursor
(pre-Mir +30nt flank)

CUUCCUUUUCUCUGCUGACUGCCUGUCUGUCUGGGUAAUCGCUCUAGACCAUGUGAUGUCGCAUGCUGCAGCGCUCAUGACUAGAGAGUUUACUCAUCCAGAGAGUAGUCUCCUUCUUCUCAUUGUUAG

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Structure

        10           20        30        40        50        60    
CUUCCUUUUCUCUGCUG---|    C G    UC       UCG      AC   GUGAUGUCGCA 
                    ACUGC U UCUG  UGGGUAA   CUCUAG  CAU           U
                    UGAUG A AGAC  ACUCAUU   GAGAUC  GUA           G
GAUUGUUACUCUUCUUCCUC^    - G    CU       UGA      A-   CUCGCGACGUC 
       120       110        100        90        80         70

Deep sequencing

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Comment

It is not clear either from phylogenetic or syntenic information how many Mir-279 genes were present in the last common ancestor of protostomes and how the Drosophila Mir-279s relate to the other invertebrate Mir-279s and thus these multiple paralogues in invertebrates are classified here as orphans pending new data.

3' NTU

Motifs

CNNC at 3p(+17), UGUG in loop

Tissue expression

To

Star sequence

Cte-Mir-279-o13_5p*

mirBase accession

MIMAT0013554

Sequence

0- CUGGGUAAUCGCUCUAGACCAU -22

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Mature sequence

Cte-Mir-279-o13_3p

mirBase accession

MIMAT0013555

Sequence

47- UGACUAGAGAGUUUACUCAUCC -69

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