Mir-279-o12

MirGeneDB ID

Cte-Mir-279-o12

Family name

MIR-279 (all species)

Seed

GACUAGA

Species

Polychaete worm (Capitella teleta)

MiRBase ID

cte-mir-996

Paralogues

Cte-Mir-279-o11 Cte-Mir-279-o13

Orthologues

Bpl-Mir-279 Cgi-Mir-279 Esc-Mir-279 Isc-Mir-279 Lgi-Mir-279 Lpo-Mir-279-P12 Npo-Mir-279 Obi-Mir-279 Ovu-Mir-279

Node of Origin (locus)

C. teleta

Node of Origin (family)

Protostomia

Genome context
(Capitella_teleta_v1.0)

CAPTEscaffold_39: 146002-146056 [+] Ensembl

Clustered miRNAs
(< 50kb from Mir-279-o12)

Mir-279-o12 CAPTEscaffold_39: 146002-146056 [+] Ensembl
Mir-279-o13 CAPTEscaffold_39: 146223-146291 [+] Ensembl

Precursor
(pre-Mir +30nt flank)

UUUCACUGUUGGCUGAUGCCAUUGGCGGAGGCGGGUGUGCUGUCUGGUGCGUGUGUUUCACCAUGACUAGAUAACACAUUCGUCUCUGCCUCUUGAGCACCCUCGUCCUGUUAUG

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Structure

        10         20         30        40        50       
UUUCACUGUUGGCUGAUGC-  UU-|               C        G    UGU 
                    CA   GGCGGAGGCGGGUGUG UGUCUGGU CGUG   U
                    GU   CCGUCUCUGCUUACAC AUAGAUCA GUAC   U
GUAUUGUCCUGCUCCCACGA  UCU^               A        -    CAC 
   110       100        90        80        70         60

Deep sequencing

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Comment

It is not clear either from phylogenetic or syntenic information how many Mir-279 genes were present in the last common ancestor of protostomes and how the Drosophila Mir-279s relate to the other invertebrate Mir-279s and thus these multiple paralogues in invertebrates are classified here as orphans pending new data.

3' NTU

Motifs

UG at 5p(-14), CNNC at 3p(+17), UGUG in loop

Tissue expression

To

Star sequence

Cte-Mir-279-o12_5p* (predicted)

mirBase accession

None

Sequence

0- GCGGGUGUGCUGUCUGGUGCGUG -23

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Mature sequence

Cte-Mir-279-o12_3p

mirBase accession

MIMAT0013552

Sequence

33- UGACUAGAUAACACAUUCGUCU -55

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