MirGeneDB 2.1
MirGeneDB ID

Cte-Mir-278

Family name MIR-278 (all species)
Seed CGGUGGG
Species Polychaete worm (Capitella teleta)
MiRBase ID cte-mir-278
Paralogues
Orthologues Aae-Mir-278  Bfl-Mir-278  Bge-Mir-278  Bla-Mir-278  Cgi-Mir-278  Csc-Mir-278  Dan-Mir-278  Dma-Mir-278  Dme-Mir-278  Dmo-Mir-278  Dpu-Mir-278  Dsi-Mir-278  Dya-Mir-278  Efe-Mir-278-P1-v1  Efe-Mir-278-P1-v2  Efe-Mir-278-P2  Esc-Mir-278  Hme-Mir-278  Isc-Mir-278  Lan-Mir-278  Lgi-Mir-278  Lpo-Mir-278-P3  Lpo-Mir-278-P4  Lpo-Mir-278-P5  Npo-Mir-278  Obi-Mir-278  Ovu-Mir-278  Pfl-Mir-278  Pmi-Mir-278  Sko-Mir-278  Sme-Mir-278  Spu-Mir-278  Xbo-Mir-278 
Node of Origin (locus) Bilateria
Node of Origin (family) Bilateria
Genome context
(Capitella_teleta_v1.0)		 CAPTEscaffold_296: 103173-103248 [+] Ensembl
Precursor
(pre-Mir +30nt flank)
GCACUUAUUGACCUUGUACGCCCGUCGCCCACGAGCGAUUGUUUCUCGUGAUCACGUGUCUUUGUAUCAAUACAAAAUGGCGGAUCGGUGGGACUUUCGUUCGUUCGGGGCGGGCGGAUUAACUUCCGGUCAUGAU
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Structure
        10          20        30         40        50        60        
GCACUUAUUGACCUUGUA--|       G  C-        UU  UU UCG     ACGUGUCUUUGUAU 
                    CGCCCGUC CC  ACGAGCGA  GU  C   UGAUC              \
                    GCGGGCGG GG  UGCUUGCU  CA  G   GCUAG              C
UAGUACUGGCCUUCAAUUAG^       -  CU        UU  GG UG-     GCGGUAAAACAUAA 
    130       120       110        100        90         80        70
Deep sequencing
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3' NTU No
MotifsCNNC at 3p(+17)
Tissue expression
-   +
To
Star sequence

Cte-Mir-278_5p* (predicted)
mirBase accessionNone
Sequence 
0- ACGAGCGAUUGUUUCUCGUGAUC -23
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Mature sequence

Cte-Mir-278_3p
mirBase accessionMIMAT0009538
Sequence 
54- UCGGUGGGACUUUCGUUCGUUC -76
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