MirGeneDB 2.1
MirGeneDB ID

Cte-Mir-1987

Family name MIR-1987 (all species)
Seed CUGCCAG
Species Polychaete worm (Capitella teleta)
MiRBase ID cte-mir-1987
Paralogues
Orthologues Efe-Mir-1987 
Node of Origin (locus) Annelida
Node of Origin (family) Annelida
Genome context
(Capitella_teleta_v1.0)		 CAPTEscaffold_122: 378005-378063 [+] Ensembl
Clustered miRNAs
(< 50kb from Mir-1987)		 Mir-2705 CAPTEscaffold_122: 377049-377108 [+] Ensembl
Mir-1987 CAPTEscaffold_122: 378005-378063 [+] Ensembl
Precursor
(pre-Mir +30nt flank)
AACCAUGACCUUUGUUUGCCAGCGACAAUCACGACUUUACUUCUGAGCAUCUUGUUCUUGGCUGCAAACUGCCAGAUGUAAUGUUGUGCACGAAGUUGGUCCAGCCUCAAACAUGGAGA
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Structure
        10          20        30        40        50         
AACCAUGACCUUUGUUU--|     GACAAU      U    U    A   UCUUGUUCU 
                   GCCAGC      CACGAC UUAC UCUG GCA         U
                   UGGUUG      GUGUUG AAUG AGAC CGU         G
AGAGGUACAAACUCCGACC^     AAGCAC      U    U    -   CAAACGUCG 
       110       100        90        80         70        60
Deep sequencing
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CommentA star has not yet been recorded from this miRNA but it is deeply conserved across annelids.
3' NTU No
MotifsUG at 5p(-14), CNNC at 3p(+17)
Tissue expression
-   +
To
Star sequence

Cte-Mir-1987_5p* (predicted)
mirBase accessionNone
Sequence 
0- ACGACUUUACUUCUGAGCAUCUU -23
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Mature sequence

Cte-Mir-1987_3p
mirBase accessionMIMAT0009703
Sequence 
37- ACUGCCAGAUGUAAUGUUGUGC -59
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