Mir-8-P3a

MirGeneDB ID

Cli-Mir-8-P3a

Family name

MIR-8 (all species)

Seed

AAUACUG

Species

Rock pigeon (Columba livia)

MiRBase ID

cli-mir-429

Paralogues

Cli-Mir-8-P1a Cli-Mir-8-P2a

Orthologues

Aae-Mir-8 Aca-Mir-8-P3a Ami-Mir-8-P3a Asu-Mir-8 Bfl-Mir-8-P3 Bge-Mir-8 Bla-Mir-8-P3 Bpl-Mir-8 Bta-Mir-8-P3a Cbr-Mir-8 Cel-Mir-8 Cfa-Mir-8-P3a Cgi-Mir-8 Cmi-Mir-8-P3a Cpi-Mir-8-P3a Cpo-Mir-8-P3a Csc-Mir-8 Cte-Mir-8 Dan-Mir-8 Dma-Mir-8 Dme-Mir-8 Dmo-Mir-8 Dno-Mir-8-P3a Dpu-Mir-8 Dre-Mir-8-P3a Dsi-Mir-8 Dya-Mir-8 Esc-Mir-8 Ete-Mir-8-P3a Gga-Mir-8-P3a Gja-Mir-8-P3a Gmo-Mir-8-P3a Hme-Mir-8 Hsa-Mir-8-P3a Isc-Mir-8 Lan-Mir-8 Lch-Mir-8-P3a Lgi-Mir-8 Loc-Mir-8-P3a Mal-Mir-8-P3a Mdo-Mir-8-P3a Mml-Mir-8-P3a Mmu-Mir-8-P3a Mun-Mir-8-P3a Npo-Mir-8 Oan-Mir-8-P3a Obi-Mir-8 Ocu-Mir-8-P3a Ovu-Mir-8 Pbv-Mir-8-P3a Pfl-Mir-8 Pmi-Mir-8 Rno-Mir-8-P3a Sha-Mir-8-P3a Sko-Mir-8 Spt-Mir-8-P3a Spu-Mir-8 Sto-Mir-8-P3a Tca-Mir-8 Tni-Mir-8-P3a Xla-Mir-8-P3a1 Xla-Mir-8-P3a2 Xtr-Mir-8-P3a

Node of Origin (locus)

Vertebrata

Node of Origin (family)

Bilateria

Genome context
(colLiv2)

scaffold693: 2382092-2382150 [+]

Clustered miRNAs
(< 50kb from Mir-8-P3a)

Mir-8-P1a scaffold693: 2377086-2377145 [+]
Mir-8-P2a scaffold693: 2379416-2379476 [+]
Mir-8-P3a scaffold693: 2382092-2382150 [+]

Precursor
(pre-Mir +30nt flank)

UUCCUCUAGCCCAAGUGCCUGCUGAUUGCUGUCUUACCAGGCAAAGUUAGAUCUAGCUAUUUUUGUCUAAUACUGUCUGGUAAUGCCGUCAAUCGCAUCGGCAAAAAUCUUCGUCUUGG

Get precursor sequence

Structure

        10           20         30        40        50        
UUCCUCUAGCCCAAGUG-  --|  U     - U  C          AA      UCUAGC 
                  CC  UGC GAUUG C GU UUACCAGGCA  GUUAGA      U
                  GG  ACG CUAAC G CG AAUGGUCUGU  UAAUCU      A
GGUUCUGCUUCUAAAAAC  CU^  -     U C  U          CA      GUUUUU 
       110       100         90        80        70        60