MirGeneDB 2.1
MirGeneDB ID

Cgi-Mir-2001

Family name MIR-2001 (all species)
Seed UUGUGAC
Species Pacific oyster (Crassostrea gigas)
MiRBase ID
Paralogues
Orthologues Bge-Mir-2001-P1  Bge-Mir-2001-P2  Cbr-Mir-2001  Cel-Mir-2001  Csc-Mir-2001  Cte-Mir-2001  Dan-Mir-2001  Dme-Mir-2001  Dmo-Mir-2001  Dsi-Mir-2001  Dya-Mir-2001  Hme-Mir-2001  Isc-Mir-2001  Lan-Mir-2001-P3  Lan-Mir-2001-P4  Lgi-Mir-2001  Lpo-Mir-2001  Npo-Mir-2001  Pfl-Mir-2001  Pmi-Mir-2001  Sko-Mir-2001  Spu-Mir-2001  Xbo-Mir-2001 
Node of Origin (locus) Bilateria
Node of Origin (family) Bilateria
Genome context
(CGI_GCA_000297895.1)		 scaffold1366: 96730-96789 [+] Ensembl
Precursor
(pre-Mir +30nt flank)
CCUUUUUGUGACAUCGAUAAUCCUUCCUUUUUUGUGACCGUUAUAAUGGGCAUAACGUCUUAUGAAUGCUCGUUGUAUCGAUCAUCAAAAUGGAGGAAUAUGCACGACAGAGCACAAGGU
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Structure
        10        20           30        40        50         
CCUUUUUGUGACAUCGAUAA---|   U  U    U    C  U           UAACGU 
                       UCCU CC UUUU GUGA CG UAUAAUGGGCA      C
                       AGGA GG AAAA UACU GC AUGUUGCUCGU      U
UGGAACACGAGACAGCACGUAUA^   -  U    C    A  U           AAGUAU 
.       110       100         90        80        70        60
Deep sequencing
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3' NTU No
MotifsNo
Tissue expression
-   +
A- D- D- Eg F- Gi He Ju L- Ma Ma Pe Re Sp Um Ea Fe Ha La Ma
Mature sequence

Cgi-Mir-2001_5p
mirBase accessionNone
Sequence 
0- UUUGUGACCGUUAUAAUGGGCA -22
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Star sequence

Cgi-Mir-2001_3p*
mirBase accessionNone
Sequence 
38- CUCGUUGUAUCGAUCAUCAAAA -60
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