Mir-2001-P1

MirGeneDB ID

Bge-Mir-2001-P1

Family name

MIR-2001 (all species)

Seed

UUGUGAC

Species

Cockroach (Blattella germanica)

MiRBase ID

Paralogues

Bge-Mir-2001-P2

Orthologues

Cbr-Mir-2001 Cel-Mir-2001 Cgi-Mir-2001 Csc-Mir-2001 Cte-Mir-2001 Dan-Mir-2001 Dme-Mir-2001 Dmo-Mir-2001 Dsi-Mir-2001 Dya-Mir-2001 Hme-Mir-2001 Isc-Mir-2001 Lgi-Mir-2001 Lpo-Mir-2001 Npo-Mir-2001 Pfl-Mir-2001 Pmi-Mir-2001 Sko-Mir-2001 Spu-Mir-2001 Xbo-Mir-2001

Node of Origin (locus)

B. germanica

Node of Origin (family)

Bilateria

Genome context
(Bger_2.0)

KZ617672.1: 125160-125225 [-] Ensembl

Precursor
(pre-Mir +30nt flank)

ACUGAGCGGGGAUCGAAGAAGGGAUUUUGGUUUGUGACCGCCAUAAUGGGCAUUUCUUACAAUUCACUACAAUGCUCGUUAUCACGUUCGCAAUUCCGACGCCCUUCUAUGACGUCAUCUUCAGCU

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Structure

        10          20        30         40        50        60  
ACUGAGCGGGGAUCGAA--|     AUU    U-      C  CC          UUUCUUACA 
                   GAAGGG   UUGG  UUGUGA CG  AUAAUGGGCA         A
                   CUUCCC   AGCC  AACGCU GC  UAUUGCUCGU         U
UCGACUUCUACUGCAGUAU^     GC-    UU      U  AC          AACAUCACU 
    120       110       100         90        80        70

Deep sequencing

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3' NTU

Unknown

Motifs

CNNC at 3p(+17)

Tissue expression

Ad	Ad	Ny	Ny	Ny	Ny	Ny	Ny	Ny	Ny	Ov	Co	Co	Em	Em	Em	Em	Em	Em	Em	Em	Em	Em	No	No

Mature sequence

Bge-Mir-2001-P1_5p

mirBase accession

None

Sequence

0- UUUGUGACCGCCAUAAUGGGCA -22

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Star sequence

Bge-Mir-2001-P1_3p* (predicted)

mirBase accession

None

Sequence

44- CUCGUUAUCACGUUCGCAAUUC -66

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