Mir-493

MirGeneDB ID

Cfa-Mir-493

Family name

MIR-493 (all species)

Seed

UGUACAU

Species

Dog (Canis familiaris)

MiRBase ID

cfa-mir-493

Paralogues

Orthologues

Bta-Mir-493 Cpo-Mir-493 Dno-Mir-493 Ete-Mir-493 Hsa-Mir-493 Mml-Mir-493 Mmu-Mir-493 Ocu-Mir-493 Rno-Mir-493

Node of Origin (locus)

Eutheria

Node of Origin (family)

Eutheria

Genome context
(canFam3_add)

chr8: 69094351-69094413 [+] UCSC Ensembl

Clustered miRNAs
(< 50kb from Mir-493)

Mir-493 chr8: 69094351-69094413 [+] UCSC Ensembl
Mir-433 chr8: 69103838-69103911 [+] UCSC Ensembl
Mir-127 chr8: 69104942-69104997 [+] UCSC Ensembl
Mir-432 chr8: 69106428-69106496 [+] UCSC Ensembl
Mir-136-v1 chr8: 69106615-69106670 [+] UCSC Ensembl
Mir-136-v2 chr8: 69106615-69106670 [+] UCSC Ensembl
Mir-370 chr8: 69132798-69132854 [+] UCSC Ensembl

Precursor
(pre-Mir +30nt flank)

GCUUCGGGGCCCCCUCUGGCCGCCAGGGCCUUGUACAUGGUAGGCUUUCAUUCAUUCGUUUGCACAUUCGGUGAAGGUCUACUGUGUGCCAGGCCCUGUGCCAGGCAUCGAGUAAAUGGACAU

Get precursor sequence

Structure

        10            20        30        40        50        60 
GCUUCGGGGCCCCCUCU----|  CGC        U                    CAUUCGUU 
                     GGC   CAGGGCCU GUACAUGGUAGGCUUUCAUU        \
                     CCG   GUCCCGGA CGUGUGUCAUCUGGAAGUGG        U
UACAGGUAAAUGAGCUACGGA^  U--        C                    CUUACACG 
 120       110       100          90        80        70

Deep sequencing

Go to detailed chart

3' NTU

Motifs

UG at 5p(-14)

Tissue expression

Bl	Ce	Co	He	Hy	Ki	Ki	Li	Lu	Ov	Sk	Te	Te

Mature sequence

Cfa-Mir-493_5p

mirBase accession

None

Sequence

0- UUGUACAUGGUAGGCUUUCAUU -22

Get sequence

Co-mature sequence

Cfa-Mir-493_3p

mirBase accession

MIMAT0006711

Sequence

41- UGAAGGUCUACUGUGUGCCAGG -63

Get sequence

Proposed targets

TargetScanVert: cfa-miR-493
miRDB: MIMAT0006711