Mir-29-P2b

MirGeneDB ID

Bta-Mir-29-P2b

Family name

MIR-29 (all species)

Seed

AGCACCA

Species

Cow (Bos taurus)

MiRBase ID

bta-mir-29a

Paralogues

Bta-Mir-29-P1b-v1 Bta-Mir-29-P1b-v2 Bta-Mir-29-P1d7-v1 Bta-Mir-29-P1d7-v2 Bta-Mir-29-P1d8-v1 Bta-Mir-29-P1d8-v2 Bta-Mir-29-P2d1 Bta-Mir-29-P2d2

Orthologues

Aca-Mir-29-P2b Ami-Mir-29-P2b Asu-Mir-29-P2 Bfl-Mir-29-P2 Bla-Mir-29-P2 Cbr-Mir-29-P2 Cel-Mir-29-P2 Cfa-Mir-29-P2b Cgi-Mir-29-P2 Cin-Mir-29-P2 Cli-Mir-29-P2b Cmi-Mir-29-P2b Cpi-Mir-29-P2b Cpo-Mir-29-P2b Csc-Mir-29-P2 Cte-Mir-29-P2 Dno-Mir-29-P2b Dre-Mir-29-P2b1 Esc-Mir-29-P2 Ete-Mir-29-P2b Gga-Mir-29-P2b Gja-Mir-29-P2b Gmo-Mir-29-P2b1 Hsa-Mir-29-P2b Isc-Mir-29-P2 Lch-Mir-29-P2b Lgi-Mir-29-P2 Loc-Mir-29-P2b Mal-Mir-29-P2b1-v1 Mal-Mir-29-P2b1-v2 Mdo-Mir-29-P2b Mml-Mir-29-P2b Mmu-Mir-29-P2b Mun-Mir-29-P2b Npo-Mir-29-P2 Oan-Mir-29-P2b Obi-Mir-29-P2 Ocu-Mir-29-P2b Ovu-Mir-29-P2 Pbv-Mir-29-P2b Pfl-Mir-29-P2 Pmi-Mir-29-P2 Rno-Mir-29-P2b Sha-Mir-29-P2b Sko-Mir-29-P2 Spt-Mir-29-P2b Spu-Mir-29-P2 Sto-Mir-29-P2b Tgu-Mir-29-P2b Tni-Mir-29-P2b1 Xbo-Mir-29-P2 Xla-Mir-29-P2b3 Xla-Mir-29-P2b4 Xtr-Mir-29-P2b

Node of Origin (locus)

Gnathostomata

Node of Origin (family)

Bilateria

Genome context
(GCF_002263795.1_ARS-UCD1.2_BTA)

NC_037331.1: 94636468-94636527 [-] UCSC Ensembl

Clustered miRNAs
(< 50kb from Mir-29-P2b)

Mir-29-P2b NC_037331.1: 94636468-94636527 [-] UCSC Ensembl
Mir-29-P1b-v1 NC_037331.1: 94636850-94636913 [-] UCSC Ensembl
Mir-29-P1b-v2 NC_037331.1: 94636851-94636912 [-] UCSC Ensembl

Precursor
(pre-Mir +30nt flank)

CUCCUCCUGUGACCCCCCCCUUAGAGGAUGACUGAUUUCUUUUGGUGUUCAGAGUCAAUAUAAUUUUCUAGCACCAUCUGAAAUCGGUUAUAAUGAUUGGGGAAGAGCACCAGGCUGCUG

Get precursor sequence

Structure

        10         20         30        40        50          
CUCCUCCUGUGACCCCC-    UAGAGG-|           UUU       C   GUCAAU 
                  CCCU       AUGACUGAUUUC   UGGUGUU AGA      \
                  GGGG       UAUUGGCUAAAG   ACCACGA UCU      A
GUCGUCGGACCACGAGAA    UUAGUAA^           UCU       -   UUUAAU 
.       110       100        90        80        70

Deep sequencing

Go to detailed chart

3' NTU

Motifs

CNNC at 3p(+17)

Tissue expression

Ad	Cd	Fe	Bo	Br	Ce	Co	Co	De	He	Hy	Ir	Ki	La	Lo	No	Op	Or	Pe	Re	Su	Te

Star sequence

Bta-Mir-29-P2b_5p*

mirBase accession

None

Sequence

0- ACUGAUUUCUUUUGGUGUUCAGA -23

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Mature sequence

Bta-Mir-29-P2b_3p

mirBase accession

MIMAT0003518

Sequence

38- UAGCACCAUCUGAAAUCGGUUA -60

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Proposed targets

TargetScanVert: bta-miR-29a