MirGeneDB 2.1
MirGeneDB ID

Aae-Mir-3-P2b

Family name MIR-3 (all species)
Seed CACUGGG
Species Yellow fever mosquito (Aedes aegypti)
MiRBase ID aae-mir-309b
Paralogues Aae-Mir-3-P2a1  Aae-Mir-3-P2a2 
Orthologues Dan-Mir-3-P2  Dma-Mir-3  Dme-Mir-3-P2  Dmo-Mir-3-P2  Dpu-Mir-3  Dsi-Mir-3-P2  Dya-Mir-3-P2 
Node of Origin (locus) A. aegypti
Node of Origin (family) Pancrustacea
Genome context
(Aaeg_L3)		 supercont1.464: 825634-825696 [+] Ensembl
Clustered miRNAs
(< 50kb from Mir-3-P2b)		 Mir-279-P2a supercont1.464: 825007-825079 [+] Ensembl
Mir-3-P2b supercont1.464: 825634-825696 [+] Ensembl
Precursor
(pre-Mir +30nt flank)
UGAGUGUAGAUGAAAGAAACCCGGCUUAUGCGUCAAACUCCGUUCAGUUGGUGGAGUCAUUUUCCAAGUCAUCACUGGGCAUAGUUUGUCGCAUAAUUAAAAACUAUAUCAACUUUUAUCGUU
Get precursor sequence
Structure
        10        20          30        40        50        60 
UGAGUGUAGAUGAAAGAAACCCGGC--|      U      CC       U    GAGUCAU 
                           UUAUGCG CAAACU  GUUCAGU GGUG       U
                           AAUACGC GUUUGA  CGGGUCA CUAC       U
UUGCUAUUUUCAACUAUAUCAAAAAUU^      U      UA       -    UGAACCU 
 120       110       100        90        80         70
Deep sequencing
Go to detailed chart
3' NTU Unknown
MotifsCNNC at 3p(+17)
Tissue expression
-   +
Fe Fe Fe Fe To To To
Star sequence

Aae-Mir-3-P2b_5p* (predicted)
mirBase accessionMIMAT0014319
Sequence 
0- CGUCAAACUCCGUUCAGUUGGUG -23
Get sequence
Mature sequence

Aae-Mir-3-P2b_3p
mirBase accessionMIMAT0014320
Sequence 
41- UCACUGGGCAUAGUUUGUCGCA -63
Get sequence