MirGeneDB 2.1
MirGeneDB ID

Xtr-Mir-217-v2

Family name MIR-217 (all species)
Seed UACUGCA
Species Tropical clawed frog (Xenopus tropicalis)
MiRBase ID xtr-mir-217
Paralogues Xtr-Mir-217-v1 
Orthologues Aca-Mir-217-v2  Ami-Mir-217-v2  Bfl-Mir-217  Bla-Mir-217  Bta-Mir-217-v2  Cfa-Mir-217-v2  Cli-Mir-217-v2  Cmi-Mir-217  Cpi-Mir-217-v2  Cpo-Mir-217-v2  Dno-Mir-217-v2  Dre-Mir-217-v2  Ete-Mir-217-v2  Gga-Mir-217-v2  Gja-Mir-217-v2  Gmo-Mir-217  Hsa-Mir-217-v2  Lch-Mir-217  Loc-Mir-217  Mal-Mir-217  Mdo-Mir-217  Mml-Mir-217-v2  Mmu-Mir-217-v2  Mun-Mir-217-v2  Oan-Mir-217-v2  Ocu-Mir-217-v2  Pbv-Mir-217-v2  Rno-Mir-217-v2  Sha-Mir-217-v2  Spt-Mir-217  Sto-Mir-217-v2  Tgu-Mir-217-v2  Tni-Mir-217 
Node of Origin (locus) Chordata
Node of Origin (family) Chordata
Genome context
(xenTro9_add)		 chr5: 26048672-26048732 [-] UCSC Ensembl
Clustered miRNAs
(< 50kb from Mir-217-v2)		 Mir-217-v2 chr5: 26048672-26048732 [-] UCSC Ensembl
Mir-217-v1 chr5: 26048673-26048731 [-] UCSC Ensembl
Mir-216-P2b chr5: 26049038-26049099 [-] UCSC Ensembl
Precursor
(pre-Mir +30nt flank)
AGGUGAAAUGCAAUUAUUUUGAUGUUGUAGAUACUGCAUCAGGAACUGAUUGGAUCCCAGGGAGCAGCCAUCAGUUCCUAAUGCACUGCCUUCGGCAUCUAAACAAACAUCAGUCUGUUUA
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Structure
        10        20          30        40        50        60
AGGUGAAAUGCAAUUAUUUU--|      U  A  C     C          U  AUCCCA 
                      GAUGUUG AG UA UGCAU AGGAACUGAU GG      G
                      CUACGGC UC GU ACGUA UCCUUGACUA CC      G
AUUUGUCUGACUACAAACAAAU^      U  C  C     A          -  GACGAG 
 .       110       100        90        80        70
Deep sequencing
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3' NTU No
MotifsCNNC at 3p(+17)
Tissue expression
-   +
Br Em Em Em Em He
Mature sequence

Xtr-Mir-217-v2_5p
mirBase accessionMIMAT0003630
Sequence 
0- AUACUGCAUCAGGAACUGAUUGG -23
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Proposed targets TargetScanVert: xtr-miR-217
Star sequence

Xtr-Mir-217-v2_3p*
mirBase accessionNone
Sequence 
39- AUCAGUUCCUAAUGCACUGCCU -61
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