| MirGeneDB ID | Tni-Mir-728-P2 |
|---|
| Family name |
MIR-728 (all species) |
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| Seed |
AUACUAA |
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| Species |
Pufferfish (Tetraodon nigroviridis) |
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| MiRBase ID |
|
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| Paralogues |
Tni-Mir-728-P1
|
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| Orthologues |
Gmo-Mir-728-P2
Loc-Mir-728
Mal-Mir-728-P2
|
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| Node of Origin (locus) |
Clupeocephala
|
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| Node of Origin (family) |
Neopterygii
|
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Genome context
(Tetraodon_nigroviridis.TETRAODON8.dna.toplevel) |
15: 2762818-2762877 [-]
UCSC
Ensembl
|
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Precursor
(pre-Mir +30nt flank) |
GUGCUUCAUCGGAUUCUGGCCCCCCUGAGGAAAUGUAGUAGACUAUAAGUAUACGUGGGUCAGACUGUAUACUAAGUAUACUACGUUUACUCAAGAGCGGCGCCUCGUUUCUGCCGCCGG
Get precursor sequence
|
|---|
| Structure | 10 20 30 40 50 60
GUGCUUCAUCGGAUUCUG- CCCC-| G G AUA UGGG
GCC UGAG AAAUGUAGUA ACU AGUAUACG U
CGG ACUC UUUGCAUCAU UGA UCAUAUGU C
GGCCGCCGUCUUUGCUCCG CGAGA^ A A A-- CAGA
. 110 100 90 80 70 |
|---|
| Deep sequencing |
Go to detailed chart
|
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| 3' NTU |
Unknown
|
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| Motifs | UG at 5p(-14) |
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Tissue expression
|
|
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| Star sequence |
Tni-Mir-728-P2_5p* |
| mirBase accession | None |
|---|
| Sequence |
0- AAAUGUAGUAGACUAUAAGUAUACG -25
Get sequence
|
|---|
| Mature sequence |
Tni-Mir-728-P2_3p (predicted) |
| mirBase accession | None |
|---|
| Sequence |
37- UAUACUAAGUAUACUACGUUUAC -60
Get sequence
|
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