| MirGeneDB ID | Tni-Mir-196-P4a1 |
|---|---|
| Family name | MIR-196 (all species) |
| Seed | AGGUAGU |
| Species | Pufferfish (Tetraodon nigroviridis) |
| MiRBase ID | tni-mir-196a-1 |
| Paralogues | Tni-Mir-196-P1a Tni-Mir-196-P1b Tni-Mir-196-P3a Tni-Mir-196-P4a2 Tni-Mir-196-P4a3 |
| Orthologues | Aca-Mir-196-P4 Ami-Mir-196-P4 Bta-Mir-196-P4 Cfa-Mir-196-P4 Cin-Mir-196 Cli-Mir-196-P4 Cmi-Mir-196-P4 Cpi-Mir-196-P4 Cpo-Mir-196-P4 Dno-Mir-196-P4 Dre-Mir-196-P4a Ete-Mir-196-P4 Gga-Mir-196-P4 Gja-Mir-196-P4 Gmo-Mir-196-P4a Hsa-Mir-196-P4 Lch-Mir-196-P4 Loc-Mir-196-P4 Mal-Mir-196-P4a Mml-Mir-196-P4 Mmu-Mir-196-P4 Mun-Mir-196-P4 Oan-Mir-196-P4 Ocu-Mir-196-P4 Rno-Mir-196-P4 Sha-Mir-196-P4 Spt-Mir-196-P4 Tgu-Mir-196-P4 Xtr-Mir-196-P4 |
| Node of Origin (locus) | T. nigroviridis |
| Node of Origin (family) | Olfactores |
| Genome context (Tetraodon_nigroviridis.TETRAODON8.dna.toplevel) |
|
| Precursor (pre-Mir +30nt flank) | UAGGUAGUUUCAUGUUGUUGGGGAUGGCUUCCUGGCUCGGCAACAAGAAACUGCCUUGAGet precursor sequence |
| Structure | 10 20 U--| A GAU C AGGUAGUUUC UGUUGUUGGG GG \ UCCGUCAAAG ACAACGGCUC CC U AGU^ A GGU U 50 40 30 |
| Deep sequencing | |
| 3' NTU | Unknown |
| Motifs | No |
| Mature sequence | Tni-Mir-196-P4a1_5p |
| mirBase accession | MIMAT0002956 |
| Sequence |
0- UAGGUAGUUUCAUGUUGUUGGG -22
Get sequence
|
| Star sequence | Tni-Mir-196-P4a1_3p* (predicted) |
| mirBase accession | None |
| Sequence |
37- CGGCAACAAGAAACUGCCUUGA -59
Get sequence
|
