| MirGeneDB ID | Loc-Mir-196-P4 |
|---|---|
| Family name | MIR-196 (all species) |
| Seed | AGGUAGU |
| Species | Spotted gar (Lepisosteus oculatus) |
| MiRBase ID | |
| Paralogues | Loc-Mir-196-P1 Loc-Mir-196-P3 |
| Orthologues | Aca-Mir-196-P4 Ami-Mir-196-P4 Bta-Mir-196-P4 Cfa-Mir-196-P4 Cin-Mir-196 Cli-Mir-196-P4 Cmi-Mir-196-P4 Cpi-Mir-196-P4 Cpo-Mir-196-P4 Dno-Mir-196-P4 Dre-Mir-196-P4a Dre-Mir-196-P4b Ete-Mir-196-P4 Gga-Mir-196-P4 Gja-Mir-196-P4 Gmo-Mir-196-P4a Hsa-Mir-196-P4 Lch-Mir-196-P4 Mal-Mir-196-P4a Mml-Mir-196-P4 Mmu-Mir-196-P4 Mun-Mir-196-P4 Oan-Mir-196-P4 Ocu-Mir-196-P4 Rno-Mir-196-P4 Sha-Mir-196-P4 Spt-Mir-196-P4 Tgu-Mir-196-P4 Tni-Mir-196-P4a1 Tni-Mir-196-P4a2 Tni-Mir-196-P4a3 Xla-Mir-196-P4c-v1 Xla-Mir-196-P4c-v2 Xla-Mir-196-P4d-v1 Xla-Mir-196-P4d-v2 Xtr-Mir-196-P4 |
| Node of Origin (locus) | Gnathostomata |
| Node of Origin (family) | Olfactores |
| Genome context (LepOcu1) |
|
| Precursor (pre-Mir +30nt flank) | UAGGUAGUUUCAUGUUGUUGGGAUUGACUUCCUGGCUCGGCAACAAGAAACUGCCUUGAGet precursor sequence |
| Structure | 10 20 U--| A AUUGAC AGGUAGUUUC UGUUGUUGGG \ UCCGUCAAAG ACAACGGCUC U AGU^ A GGUCCU 50 40 30 |
| Deep sequencing | |
| Comment | The precursor sequence is incomplete at the 5' end and is thus taken from the unique 5p read. |
| 3' NTU | No |
| Motifs | No |
| Mature sequence | Loc-Mir-196-P4_5p |
| mirBase accession | None |
| Sequence |
0- UAGGUAGUUUCAUGUUGUUGGGA -23
Get sequence
|
| Star sequence | Loc-Mir-196-P4_3p* |
| mirBase accession | None |
| Sequence |
36- UCGGCAACAAGAAACUGCCUUGA -59
Get sequence
|
