| MirGeneDB ID | Tgu-Mir-1720 |
|---|
| Family name |
MIR-1720 (all species) |
|---|
| Seed |
AAGCAAC |
|---|
| Species |
Zebra finch (Taeniopygia guttata) |
|---|
| MiRBase ID |
|
|---|
| Paralogues |
|
|---|
| Orthologues |
Aca-Mir-1720
Ami-Mir-1720
Cli-Mir-1720
Cpi-Mir-1720
Gga-Mir-1720
Gja-Mir-1720
Pbv-Mir-1720
Spt-Mir-1720
|
|---|
| Node of Origin (locus) |
Diapsida
|
|---|
| Node of Origin (family) |
Diapsida
|
|---|
Genome context
(TaeGut1_add) |
10: 13788705-13788765 [-]
UCSC
Ensembl
|
|---|
Precursor
(pre-Mir +30nt flank) |
CUGGGGCUGCCUGCGGCCCUUCUCCUCUUCUGACCACCUCGGACAUUGCUUUUGUGAGCCUUGAGAGCGAAGCAACGCGAGGCCGGUCUGAAACCCCCCCGUUCAACCAUGCCCCAGCCGG
Get precursor sequence
|
|---|
| Structure | 10 20 30 40 50 60
CUGGGGCUGCCUGCGGCCCUUCUCCUC-- U A-| GACA UGUGAGC
UUC GACC CCUCG UUGCUUU C
AAG CUGG GGAGC AACGAAG U
GGCCGACCCCGUACCAACUUGCCCCCCCA U CC^ GC-- CGAGAGU
. 110 100 90 80 70 |
|---|
| Deep sequencing |
Go to detailed chart
|
|---|
| 3' NTU |
No
|
|---|
| Motifs | No |
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Tissue expression
|
|
|---|
| Star sequence |
Tgu-Mir-1720_5p* |
| mirBase accession | None |
|---|
| Sequence |
0- UGACCACCUCGGACAUUGCUUUUG -24
Get sequence
|
|---|
| Mature sequence |
Tgu-Mir-1720_3p |
| mirBase accession | None |
|---|
| Sequence |
38- GAAGCAACGCGAGGCCGGUCUGA -61
Get sequence
|
|---|
