| MirGeneDB ID | Aca-Mir-1720 |
|---|
| Family name |
MIR-1720 (all species) |
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| Seed |
GAUCACC |
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| Species |
Green anole lizard (Anolis carolinensis) |
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| MiRBase ID |
|
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| Paralogues |
|
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| Orthologues |
Ami-Mir-1720
Cli-Mir-1720
Cpi-Mir-1720
Gga-Mir-1720
Gja-Mir-1720
Pbv-Mir-1720
Spt-Mir-1720
Tgu-Mir-1720
|
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| Node of Origin (locus) |
Diapsida
|
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| Node of Origin (family) |
Diapsida
|
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Genome context
(anoCar2) |
GL343844.1: 159378-159439 [-]
UCSC
Ensembl
|
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Precursor
(pre-Mir +30nt flank) |
CCGUGAGAUACCACCUAUCUUUCCUGUUUCUGAUCACCUCUAUUGUUGCUUUUGUGGGCACUCAAAGGAAAGCAAUGGGAGGGUCGGUCUGAAAUGCCUUUUCUCCGUCUGCCAAAAUGAUG
Get precursor sequence
|
|---|
| Structure | 10 20 30 40 50 60
CCGUGAGAUACCACCUAUCUUUCCU-- U -| U A UG GUGGGC
GUUUC GAUC ACC CU U UUGCUUUU A
UAAAG CUGG UGG GA G AACGAAAG C
GUAGUAAAACCGUCUGCCUCUUUUCCG U C^ - G GU GAAACU
120 110 100 90 80 70 |
|---|
| Deep sequencing |
Go to detailed chart
|
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| 3' NTU |
Unknown
|
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| Motifs | CNNC at 3p(+17), UGUG in loop |
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Tissue expression
|
|
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| Mature sequence |
Aca-Mir-1720_5p |
| mirBase accession | None |
|---|
| Sequence |
0- UGAUCACCUCUAUUGUUGCUUUU -23
Get sequence
|
|---|
| Star sequence |
Aca-Mir-1720_3p* (predicted) |
| mirBase accession | None |
|---|
| Sequence |
39- AAGCAAUGGGAGGGUCGGUCUGA -62
Get sequence
|
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