Mir-29-P2d5

MirGeneDB ID

Rno-Mir-29-P2d5

Family name

MIR-29 (all species)

Seed

AGCACCA

Species

Norway rat (Rattus norvegicus)

MiRBase ID

rno-mir-29c-1

Paralogues

Rno-Mir-29-P1b-v1 Rno-Mir-29-P1b-v2 Rno-Mir-29-P1d5-v1 Rno-Mir-29-P1d5-v2 Rno-Mir-29-P1d6-v1 Rno-Mir-29-P1d6-v2 Rno-Mir-29-P2b Rno-Mir-29-P2d6

Orthologues

Aca-Mir-29-P2d Ami-Mir-29-P2d Asu-Mir-29-P2 Bfl-Mir-29-P2 Bla-Mir-29-P2 Cbr-Mir-29-P2 Cel-Mir-29-P2 Cgi-Mir-29-P2 Cin-Mir-29-P2 Cli-Mir-29-P2d Cmi-Mir-29-P2d Cpi-Mir-29-P2d Cpo-Mir-29-P2d Csc-Mir-29-P2 Cte-Mir-29-P2 Dno-Mir-29-P2d Esc-Mir-29-P2 Ete-Mir-29-P2d Gga-Mir-29-P2d Gja-Mir-29-P2d Hsa-Mir-29-P2d Isc-Mir-29-P2 Lch-Mir-29-P2d Lgi-Mir-29-P2 Loc-Mir-29-P2d-v1 Loc-Mir-29-P2d-v2 Mdo-Mir-29-P2d Mml-Mir-29-P2d Mmu-Mir-29-P2d Mun-Mir-29-P2d Npo-Mir-29-P2 Oan-Mir-29-P2d Obi-Mir-29-P2 Ocu-Mir-29-P2d Ovu-Mir-29-P2 Pbv-Mir-29-P2d Pfl-Mir-29-P2 Pmi-Mir-29-P2 Sha-Mir-29-P2d Sko-Mir-29-P2 Spt-Mir-29-P2d Spu-Mir-29-P2 Sto-Mir-29-P2d Tgu-Mir-29-P2d Xbo-Mir-29-P2 Xtr-Mir-29-P2d

Node of Origin (locus)

R. norvegicus

Node of Origin (family)

Bilateria

Genome context
(rn6)

chr13: 113782602-113782659 [+] UCSC Ensembl

Clustered miRNAs
(< 50kb from Mir-29-P2d5)

Mir-29-P1d5-v1 chr13: 113782066-113782130 [+] UCSC Ensembl
Mir-29-P1d5-v2 chr13: 113782067-113782129 [+] UCSC Ensembl
Mir-29-P2d5 chr13: 113782602-113782659 [+] UCSC Ensembl

Precursor
(pre-Mir +30nt flank)

ACACCACUGGUCCAUCUCUUACACAGGCUGACCGAUUUCUCCUGGUGUUCAGAGUCUGUUUUUGUCUAGCACCAUUUGAAAUCGGUUAUGAUGUAGGGGGAAAAGCACCAGCCUCAGA

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Structure

        10            20         30        40        50         
ACACCACUGGUCCAUCU----      -| GGC           UCC       C   GUCUG 
                     CUUACA CA   UGACCGAUUUC   UGGUGUU AGA     \
                     GGAUGU GU   AUUGGCUAAAG   ACCACGA UCU     U
AGACUCCGACCACGAAAAGGG      A^ ---           UUU       -   GUUUU 
      110       100        90           80        70         60

Deep sequencing

Go to detailed chart

3' NTU

Motifs

CNNC at 3p(+17)

Tissue expression

Ad	Ad	Br	Br	Br	Ce	Ce	Ce	Ce	Co	Co	Co	Co	Dr	Dr	Du	Du	Du	Du	He	He	Hi	Hi	Il	Il	Je	Je	Ki	Ki	Ki	Ki	Li	Li	Li	Li	Me	Me	Mu	Mu	Mu	Mu	Mu	Mu	Mu	Mu	Ov	Pa	Pa	St	St	St	Te	Ut	Wh	Br	Fa	He	Ki	La	Li	Li	Lu	Mu	Pa	Sk	Sm	Sp	St	Te	Th

Star sequence

Rno-Mir-29-P2d5_5p*

mirBase accession

MIMAT0003154

Sequence

0- ACCGAUUUCUCCUGGUGUUCAGA -23

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Mature sequence

Rno-Mir-29-P2d5_3p

mirBase accession

MIMAT0000803

Sequence

36- UAGCACCAUUUGAAAUCGGUUA -58

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