MirGeneDB 2.1
MirGeneDB ID

Rno-Mir-217-v1

Family name MIR-217 (all species)
Seed ACUGCAU
Species Norway rat (Rattus norvegicus)
MiRBase ID rno-mir-217
Paralogues Rno-Mir-217-v2 
Orthologues Aca-Mir-217-v1  Ami-Mir-217-v1  Bfl-Mir-217  Bla-Mir-217  Bta-Mir-217-v1  Cfa-Mir-217-v1  Cli-Mir-217-v1  Cmi-Mir-217  Cpi-Mir-217-v1  Cpo-Mir-217-v1  Dno-Mir-217-v1  Dre-Mir-217-v1  Ete-Mir-217-v1  Gga-Mir-217-v1  Gja-Mir-217-v1  Gmo-Mir-217  Hsa-Mir-217-v1  Lch-Mir-217  Loc-Mir-217  Mal-Mir-217  Mdo-Mir-217  Mml-Mir-217-v1  Mmu-Mir-217-v1  Mun-Mir-217-v1  Oan-Mir-217-v1  Ocu-Mir-217-v1  Pbv-Mir-217-v1  Sha-Mir-217-v1  Spt-Mir-217  Sto-Mir-217-v1  Tgu-Mir-217-v1  Tni-Mir-217  Xtr-Mir-217-v1 
Node of Origin (locus) Chordata
Node of Origin (family) Chordata
Genome context
(rn6)		 chr14: 113119560-113119618 [+] UCSC Ensembl
Clustered miRNAs
(< 50kb from Mir-217-v1)		 Mir-216-P2a chr14: 113101097-113101158 [+] UCSC Ensembl
Mir-216-P2b chr14: 113112147-113112208 [+] UCSC Ensembl
Mir-217-v2 chr14: 113119559-113119619 [+] UCSC Ensembl
Mir-217-v1 chr14: 113119560-113119618 [+] UCSC Ensembl
Precursor
(pre-Mir +30nt flank)
CCACAGUCAUUGUAGUUUUGAUGUCGCAGAUACUGCAUCAGGAACUGACUGGAUAAGACUCAGUCACCAUCAGUUCCUAAUGCAUUGCCUUCAGCAUCUAAACAGCCACCAGCAAACAU
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Structure
        10          20        30        40        50         
CCACAGUCAUUGUAGUUUU--|    CGC  A  C     C         C   AUAAGA 
                     GAUGU   AG UA UGCAU AGGAACUGA UGG      C
                     CUACG   UC GU ACGUA UCCUUGACU ACC      U
UACAAACGACCACCGACAAAU^    ACU  C  U     A         -   ACUGAC 
       110       100        90        80        70         60
Deep sequencing
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3' NTU No
MotifsCNNC at 3p(+17)
Tissue expression
-   +
Ad Ad Br Br Br Ce Ce Ce Ce Co Co Co Co Dr Dr Du Du Du Du He He Hi Hi Il Il Je Je Ki Ki Ki Ki Li Li Li Li Me Me Mu Mu Mu Mu Mu Mu Mu Mu Ov Pa Pa St St St Te Ut Wh Br Fa He Ki La Li Li Lu Mu Pa Sk Sm Sp St Te Th
Mature sequence

Rno-Mir-217-v1_5p
mirBase accessionMIMAT0000887
Sequence 
0- UACUGCAUCAGGAACUGACUGGA -23
Get sequence
Proposed targets microrna.org: MIMAT0000887
TargetScanVert: rno-miR-217-5p
miRDB: MIMAT0000887
Star sequence

Rno-Mir-217-v1_3p*
mirBase accessionMIMAT0017161
Sequence 
37- CAUCAGUUCCUAAUGCAUUGCC -59
Get sequence
Proposed targets TargetScanVert: rno-miR-217-3p
miRDB: MIMAT0017161