| MirGeneDB ID | Pfl-Mir-4818-P6 |
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| Family name |
MIR-4818 (all species) |
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| Seed |
AUUGCAC |
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| Species |
Ptychodera (Ptychodera flava) |
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| MiRBase ID |
|
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| Paralogues |
Pfl-Mir-4818-P1
Pfl-Mir-4818-P2
Pfl-Mir-4818-P3
Pfl-Mir-4818-P4
Pfl-Mir-4818-P5
|
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| Orthologues |
Sko-Mir-4818-P6
|
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| Node of Origin (locus) |
Enteropneusta
|
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| Node of Origin (family) |
Enteropneusta
|
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Genome context
(Pfl) |
LD345931.1: 60006-60068 [-]
|
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Precursor
(pre-Mir +30nt flank) |
GUUAAACUGCAAGUAUUGCAUGUCAUGUAACCUUGCUAUCAUAUGCAAAGAGUGUGUGUCUACAAGGGUCUCAUUGCACAUGAUAGUGGGGCUACAUGUUAUUGUACUGACGGCAAUGUAUCA
Get precursor sequence
|
|---|
| Structure | 10 20 30 40 50 60
GUUAAACUGCAAGUAUU- UGU-| A UG A A UGUGUGUC
GCA CAUGUA CCU CUAUCAU UGCAA GAG \
UGU GUACAU GGG GAUAGUA ACGUU CUC U
ACUAUGUAACGGCAGUCA UAUU^ C GU C A UGGGAACA
120 110 100 90 80 70 |
|---|
| Deep sequencing |
Go to detailed chart
|
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| 3' NTU |
No
|
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| Motifs | UG at 5p(-14), CNNC at 3p(+17), UGUG in loop |
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Tissue expression
|
|
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| Star sequence |
Pfl-Mir-4818-P6_5p* (predicted) |
| mirBase accession | None |
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| Sequence |
0- CCUUGCUAUCAUAUGCAAAGAG -22
Get sequence
|
|---|
| Mature sequence |
Pfl-Mir-4818-P6_3p |
| mirBase accession | None |
|---|
| Sequence |
41- CAUUGCACAUGAUAGUGGGGCU -63
Get sequence
|
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