| MirGeneDB ID | Ovu-Novel-55 |
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| Family name |
COL-NOVEL-55 (all species) |
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| Seed |
AAAAUUC |
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| Species |
Common octopus (Octopus vulgaris) |
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| MiRBase ID |
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| Paralogues |
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| Orthologues |
Esc-Novel-55
Obi-Novel-55
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| Node of Origin (locus) |
Coleoidea
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| Node of Origin (family) |
Coleoidea
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Genome context
(GCA_003957725.1_ASM395772v1_OVU) |
RXHP01058187.1: 57722-57779 [-]
Ensembl
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Precursor
(pre-Mir +30nt flank) |
UUUCUUCAUUUAUUGAUUGUAGCGCAGUCCUAAAAUUCAAGUCUGAGGGUUCUUUUAUUAAAUUGAACUUUCUCACUUGAAAUUUUGGCCUUCUCUAUCAACAUGCAGCACACGUAUA
Get precursor sequence
|
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| Structure | 10 20 30 40 50
UUUCUUCAUUUAUUGAUU--| CGC U U A CU UUUUA
GUAG AG CC AAA UUCAAGU GAGGGUUC U
UAUC UC GG UUU AAGUUCA CUUUCAAG U
AUAUGCACACGACGUACAAC^ UCU C U A CU UUAAA
110 100 90 80 70 60 |
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| Deep sequencing |
Go to detailed chart
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| 3' NTU |
Unknown
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| Motifs | CNNC at 3p(+17) |
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Tissue expression
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| Oc |
Oc |
Oc |
Oc |
Oc |
Oc |
Oc |
Oc |
Oc |
Oc |
Oc |
Oc |
Oc |
Oc |
Oc |
Oc |
Oc |
Oc |
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| Mature sequence |
Ovu-Novel-55_5p |
| mirBase accession | None |
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| Sequence |
0- UAAAAUUCAAGUCUGAGGGUUCU -23
Get sequence
|
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| Star sequence |
Ovu-Novel-55_3p* (predicted) |
| mirBase accession | None |
|---|
| Sequence |
35- AACUUUCUCACUUGAAAUUUUGG -58
Get sequence
|
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