| MirGeneDB ID | Obi-Novel-55 |
|---|
| Family name |
COL-NOVEL-55 (all species) |
|---|
| Seed |
AAAAUUC |
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| Species |
California two-spot octopus (Octopus bimaculoides) |
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| MiRBase ID |
|
|---|
| Paralogues |
|
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| Orthologues |
Esc-Novel-55
Ovu-Novel-55
|
|---|
| Node of Origin (locus) |
Coleoidea
|
|---|
| Node of Origin (family) |
Coleoidea
|
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Genome context
(PRJNA270931_OBI) |
KQ417010: 96312-96369 [-]
Ensembl
|
|---|
Precursor
(pre-Mir +30nt flank) |
UGUCUUCAUUUAUUAAUUGUAGCGCAGUCCUAAAAUUCAAGUCUGAGGGUUCGUUUAUUAAAUUGAACUUUCUCACUUGAAAUUUUGGCCUUCUCUAUCAACAUGCAGCACACAUCAA
Get precursor sequence
|
|---|
| Structure | 10 20 30 40 50
UGUCUUCAUUUAUUAAUU--| CGC U U A CU UUUA
GUAG AG CC AAA UUCAAGU GAGGGUUCG U
UAUC UC GG UUU AAGUUCA CUUUCAAGU U
AACUACACACGACGUACAAC^ UCU C U A CU UAAA
110 100 90 80 70 60 |
|---|
| Deep sequencing |
Go to detailed chart
|
|---|
| 3' NTU |
No
|
|---|
| Motifs | CNNC at 3p(+17) |
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Tissue expression
|
|
|---|
| Mature sequence |
Obi-Novel-55_5p |
| mirBase accession | None |
|---|
| Sequence |
0- UAAAAUUCAAGUCUGAGGGUUCG -23
Get sequence
|
|---|
| Star sequence |
Obi-Novel-55_3p* |
| mirBase accession | None |
|---|
| Sequence |
35- AACUUUCUCACUUGAAAUUUUGG -58
Get sequence
|
|---|
