| MirGeneDB ID | Ovu-Novel-52 |
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| Family name |
COL-NOVEL-52 (all species) |
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| Seed |
UUUCCCG |
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| Species |
Common octopus (Octopus vulgaris) |
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| MiRBase ID |
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| Paralogues |
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| Orthologues |
Esc-Novel-52
Obi-Novel-52
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| Node of Origin (locus) |
Coleoidea
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| Node of Origin (family) |
Coleoidea
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Genome context
(GCA_003957725.1_ASM395772v1_OVU) |
RXHP01066856.1: 1346695-1346757 [-]
Ensembl
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Precursor
(pre-Mir +30nt flank) |
AGCAACUGAAGAUUCAUGAUUAUUGUCAUUUUUUCCCGAAGUUGCGAAUCUGCAAUUAGAAUAUUACAGAGAUUUGCCACUUCGUGAGAAUUGUGACGUUAUAUUCCUAGCAGCAAUGUAAAC
Get precursor sequence
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| Structure | 10 20 30 40 50 60
AGCAACUGAAGAUUCAUGAUUAU-- U-| C U GCAAUUAG
UGUCAU UUUUC CGAAGU GCGAAUCU A
GCAGUG AAGAG GCUUCA CGUUUAGA A
CAAAUGUAACGACGAUCCUUAUAUU UU^ U C GACAUUAU
120 110 100 90 80 70 |
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| Deep sequencing |
Go to detailed chart
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| 3' NTU |
No
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| Motifs | UG at 5p(-14), CNNC at 3p(+17) |
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Tissue expression
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| Oc |
Oc |
Oc |
Oc |
Oc |
Oc |
Oc |
Oc |
Oc |
Oc |
Oc |
Oc |
Oc |
Oc |
Oc |
Oc |
Oc |
Oc |
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| Mature sequence |
Ovu-Novel-52_5p |
| mirBase accession | None |
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| Sequence |
0- UUUUCCCGAAGUUGCGAAUCUG -22
Get sequence
|
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| Star sequence |
Ovu-Novel-52_3p* |
| mirBase accession | None |
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| Sequence |
40- GAUUUGCCACUUCGUGAGAAUUG -63
Get sequence
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