| MirGeneDB ID | Esc-Novel-52 |
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| Family name |
COL-NOVEL-52 (all species) |
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| Seed |
UUUCCCG |
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| Species |
Hawaiian bobtail squid (Euprymna scolopes) |
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| MiRBase ID |
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| Paralogues |
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| Orthologues |
Obi-Novel-52
Ovu-Novel-52
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| Node of Origin (locus) |
Coleoidea
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| Node of Origin (family) |
Coleoidea
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Genome context
(GCA_004765925.1_miRNA_LOCI) |
Esc-Novel-52_pre_SRIE01029784.1:3343094-3343232: 39-101 [-]
Ensembl
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Precursor
(pre-Mir +30nt flank) |
CCAUGUGGUCUUCUAUUGAAUACUGUCGCUUUUUCCCGAAGUUGCGAAUCUGCAAACUGGAUAUCAAACGAGAUUUGCCAUUUCGUGAAAAUAGUGACGCUAUCUUCUCAACAACGUAGACAA
Get precursor sequence
|
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| Structure | 10 20 30 40 50 60
CCAUGUGGUCUUCUAUUGA- C -| C U GCAAACUGG
AUA UGUCGCU UUUUC CGAAGU GCGAAUCU \
UAU GCAGUGA AAAAG GCUUUA CGUUUAGA A
AACAGAUGCAACAACUCUUC C U^ U C GCAAACUAU
120 110 100 90 80 70 |
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| Deep sequencing |
Go to detailed chart
|
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| Comment | There are Dicer cuts -1 and -2 on the 3p arm. |
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| 3' NTU |
Unknown
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| Motifs | UG at 5p(-14), CNNC at 3p(+17) |
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Tissue expression
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| Mature sequence |
Esc-Novel-52_5p |
| mirBase accession | None |
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| Sequence |
0- UUUUCCCGAAGUUGCGAAUCUG -22
Get sequence
|
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| Star sequence |
Esc-Novel-52_3p* (predicted) |
| mirBase accession | None |
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| Sequence |
41- GAUUUGCCAUUUCGUGAAAAUA -63
Get sequence
|
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