| MirGeneDB ID | Ovu-Novel-48 |
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| Family name |
COL-NOVEL-48 (all species) |
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| Seed |
GCAAAGG |
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| Species |
Common octopus (Octopus vulgaris) |
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| MiRBase ID |
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| Paralogues |
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| Orthologues |
Esc-Novel-48
Obi-Novel-48
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| Node of Origin (locus) |
Coleoidea
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| Node of Origin (family) |
Coleoidea
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Genome context
(GCA_003957725.1_ASM395772v1_OVU) |
RXHP01054850.1: 245808-245865 [+]
Ensembl
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Precursor
(pre-Mir +30nt flank) |
GUCAUAGAACGAAUAGGCUUUUCUGCACCCAGCAAAGGGCUUGACGCUAGCGCUUAUCCCCGACAGCUAGUGACAAAGCCUUUGUGGGCAGCGGUGAGCCAUAACACGAGGACAUAGA
Get precursor sequence
|
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| Structure | 10 20 30 40 50
GUCAUAGAACGAAUAGG---| UU A- G G GA- GCUUAU
CUU CUGC CCCA CAAAGG CUU CGCUAGC C
GAG GGCG GGGU GUUUCC GAA GUGAUCG C
AGAUACAGGAGCACAAUACC^ U- AC - - ACA ACAGCC
110 100 90 80 70 60 |
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| Deep sequencing |
Go to detailed chart
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| 3' NTU |
No
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| Motifs | No |
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Tissue expression
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| Oc |
Oc |
Oc |
Oc |
Oc |
Oc |
Oc |
Oc |
Oc |
Oc |
Oc |
Oc |
Oc |
Oc |
Oc |
Oc |
Oc |
Oc |
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| Mature sequence |
Ovu-Novel-48_5p |
| mirBase accession | None |
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| Sequence |
0- AGCAAAGGGCUUGACGCUAGCG -22
Get sequence
|
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| Star sequence |
Ovu-Novel-48_3p* |
| mirBase accession | None |
|---|
| Sequence |
36- CUAGUGACAAAGCCUUUGUGGG -58
Get sequence
|
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