| MirGeneDB ID | Esc-Novel-48 |
|---|
| Family name |
COL-NOVEL-48 (all species) |
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| Seed |
GCAAAGG |
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| Species |
Hawaiian bobtail squid (Euprymna scolopes) |
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| MiRBase ID |
|
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| Paralogues |
|
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| Orthologues |
Obi-Novel-48
Ovu-Novel-48
|
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| Node of Origin (locus) |
Coleoidea
|
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| Node of Origin (family) |
Coleoidea
|
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Genome context
(GCA_004765925.1_miRNA_LOCI) |
Esc-Novel-48_pre_SRIE01007229.1:2093903-2094160: 101-158 [+]
Ensembl
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Precursor
(pre-Mir +30nt flank) |
AUCUUCGCGUCUCCGGGCUUUACUGCAUCCAGCAAAGGGCUUGACGCUAGCGAUUUACAAUCACGGCUAGUGACAAAACCUUUGUGGGUAGCGGCGAGGCAUAUCACACAAUACGCUG
Get precursor sequence
|
|---|
| Structure | 10 20 30 40 50
AUCUUCGCGUCUCCGGG-- UA -| G GC A GAUUUA
CUU CUGC AUCCA CAAAGG UUG CGCUAGC C
GGA GGCG UGGGU GUUUCC AAC GUGAUCG A
GUCGCAUAACACACUAUAC GC A^ - AA A GCACUA
110 100 90 80 70 60 |
|---|
| Deep sequencing |
Go to detailed chart
|
|---|
| 3' NTU |
No
|
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| Motifs | No |
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Tissue expression
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|
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| Mature sequence |
Esc-Novel-48_5p |
| mirBase accession | None |
|---|
| Sequence |
0- AGCAAAGGGCUUGACGCUAGCG -22
Get sequence
|
|---|
| Star sequence |
Esc-Novel-48_3p* |
| mirBase accession | None |
|---|
| Sequence |
36- CUAGUGACAAAACCUUUGUGGG -58
Get sequence
|
|---|
