| MirGeneDB ID | Ovu-Novel-47 |
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| Family name |
COL-NOVEL-47 (all species) |
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| Seed |
ACGCGUU |
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| Species |
Common octopus (Octopus vulgaris) |
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| MiRBase ID |
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| Paralogues |
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| Orthologues |
Esc-Novel-47
Obi-Novel-47
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| Node of Origin (locus) |
Coleoidea
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| Node of Origin (family) |
Coleoidea
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Genome context
(GCA_003957725.1_ASM395772v1_OVU) |
RXHP01047596.1: 104486-104544 [-]
Ensembl
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Precursor
(pre-Mir +30nt flank) |
GCUACCUUAAGCUGAAUGCAGAUUGCAAAUAGCUGGAAGCUGAAGGCGCCAUGAUUGUUAGGUAAACAACGCGUUCCGCUUUCAGUCUUUUGCAAUCAGCCUUUGUCAUCACAAGAACA
Get precursor sequence
|
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| Structure | 10 20 30 40 50
GCUACCUUAAGCUGAAU--| A UA U G CCAUGAUUGU
GC GAUUGCAAA GCUGGAAGC GAA GCG \
CG CUAACGUUU UGACUUUCG CUU CGC U
ACAAGAACACUACUGUUUC^ A UC C G AACAAAUGGA
110 100 90 80 70 60 |
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| Deep sequencing |
Go to detailed chart
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| 3' NTU |
No
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| Motifs | UG at 5p(-14), CNNC at 3p(+17) |
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Tissue expression
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| Oc |
Oc |
Oc |
Oc |
Oc |
Oc |
Oc |
Oc |
Oc |
Oc |
Oc |
Oc |
Oc |
Oc |
Oc |
Oc |
Oc |
Oc |
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| Star sequence |
Ovu-Novel-47_5p* |
| mirBase accession | None |
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| Sequence |
0- AGCUGGAAGCUGAAGGCGCCAU -22
Get sequence
|
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| Mature sequence |
Ovu-Novel-47_3p |
| mirBase accession | None |
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| Sequence |
37- AACGCGUUCCGCUUUCAGUCUU -59
Get sequence
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