| MirGeneDB ID | Esc-Novel-47 |
|---|
| Family name |
COL-NOVEL-47 (all species) |
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| Seed |
ACGCGUU |
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| Species |
Hawaiian bobtail squid (Euprymna scolopes) |
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| MiRBase ID |
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| Paralogues |
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| Orthologues |
Obi-Novel-47
Ovu-Novel-47
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| Node of Origin (locus) |
Coleoidea
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| Node of Origin (family) |
Coleoidea
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Genome context
(GCA_004765925.1_miRNA_LOCI) |
Esc-Novel-47_pre_SRIE01045993.1:5465498-5465756: 101-159 [+]
Ensembl
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Precursor
(pre-Mir +30nt flank) |
GGGACAUCACAGCAAAGAUGGAUUGCACAAAGCUGGAAGCUGAAGGCGCAAUGAUUGUUACCUAGACAACGCGUUCCGCUUUCAGUCUUAUGCAUUCUGGAUCAUUCAUCAGAACAUUU
Get precursor sequence
|
|---|
| Structure | 10 20 30 40 50
GGGACAUCACAGCAAAGAU--| U C AG U G CAAUGAUUGU
GGA UGCA AA CUGGAAGC GAA GCG \
UCU ACGU UU GACUUUCG CUU CGC U
UUUACAAGACUACUUACUAGG^ U A CU C G AACAGAUCCA
110 100 90 80 70 60 |
|---|
| Deep sequencing |
Go to detailed chart
|
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| 3' NTU |
No
|
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| Motifs | CNNC at 3p(+17) |
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Tissue expression
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| Star sequence |
Esc-Novel-47_5p* |
| mirBase accession | None |
|---|
| Sequence |
0- AGCUGGAAGCUGAAGGCGCAAU -22
Get sequence
|
|---|
| Mature sequence |
Esc-Novel-47_3p |
| mirBase accession | None |
|---|
| Sequence |
37- AACGCGUUCCGCUUUCAGUCUU -59
Get sequence
|
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