| MirGeneDB ID | Ovu-Novel-39 |
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| Family name |
COL-NOVEL-39 (all species) |
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| Seed |
GCCUUGC |
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| Species |
Common octopus (Octopus vulgaris) |
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| MiRBase ID |
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| Paralogues |
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| Orthologues |
Esc-Novel-39
Obi-Novel-39
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| Node of Origin (locus) |
Coleoidea
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| Node of Origin (family) |
Coleoidea
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Genome context
(GCA_003957725.1_ASM395772v1_OVU) |
RXHP01036038.1: 215236-215296 [+]
Ensembl
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Precursor
(pre-Mir +30nt flank) |
UUGACGGACAUAAAGAAAUGUCUUUCAUCCAGGGCAACUCUGGCUGGGUCAUCGUGAAAUAUUUGCUAUGCCUUGCCUUCUCUUGCCUUGGCUGAGAUUGACAGAUAACGGCAGACAGUAG
Get precursor sequence
|
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| Structure | 10 20 30 40 50
UUGACGGACAUAAAGAAA -- U CUCU-| U U CGUGAAA
UGUC UUUCA CCAGGGCAA GGC GGG CAU \
ACAG AGAGU GGUUCCGUU CCG UCC GUA U
GAUGACAGACGGCAAUAG UU C CUCUU^ U - UCGUUUA
. 110 100 90 80 70 |
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| Deep sequencing |
Go to detailed chart
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| 3' NTU |
No
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| Motifs | CNNC at 3p(+17), UGUG in loop |
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Tissue expression
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| Oc |
Oc |
Oc |
Oc |
Oc |
Oc |
Oc |
Oc |
Oc |
Oc |
Oc |
Oc |
Oc |
Oc |
Oc |
Oc |
Oc |
Oc |
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| Star sequence |
Ovu-Novel-39_5p* |
| mirBase accession | None |
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| Sequence |
0- AGGGCAACUCUGGCUGGGUCAUC -23
Get sequence
|
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| Mature sequence |
Ovu-Novel-39_3p |
| mirBase accession | None |
|---|
| Sequence |
38- UGCCUUGCCUUCUCUUGCCUUGG -61
Get sequence
|
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