| MirGeneDB ID | Esc-Novel-39 |
|---|
| Family name |
COL-NOVEL-39 (all species) |
|---|
| Seed |
GCCUUGC |
|---|
| Species |
Hawaiian bobtail squid (Euprymna scolopes) |
|---|
| MiRBase ID |
|
|---|
| Paralogues |
|
|---|
| Orthologues |
Obi-Novel-39
Ovu-Novel-39
|
|---|
| Node of Origin (locus) |
Coleoidea
|
|---|
| Node of Origin (family) |
Coleoidea
|
|---|
Genome context
(GCA_004765925.1_miRNA_LOCI) |
Esc-Novel-39_pre_SRIE01037593.1:6819590-6819730: 41-101 [-]
Ensembl
|
|---|
Precursor
(pre-Mir +30nt flank) |
AUGGUAGCGAAAUCCCCAGACUUCCCAUGUAGGGCAAUUCUGGCUGGGUCAUCGUGAUAAAAUUACUAUGCCUUGCCUUCUCUUGCCUUGGCUGGGAUUGGCUGAAAACAUCAACGACGUC
Get precursor sequence
|
|---|
| Structure | 10 20 30 40 50
AUGGUAGCGAAAUCCCC- ACU- UG UUCU-| U U CGUGAUA
AG UCCCA UAGGGCAA GGC GGG CAU \
UC AGGGU GUUCCGUU CCG UCC GUA A
CUGCAGCAACUACAAAAG GGUU CG CUCUU^ U - UCAUUAA
. 110 100 90 80 70 |
|---|
| Deep sequencing |
Go to detailed chart
|
|---|
| 3' NTU |
No
|
|---|
| Motifs | CNNC at 3p(+17), UGUG in loop |
|---|
Tissue expression
|
|
|---|
| Star sequence |
Esc-Novel-39_5p* |
| mirBase accession | None |
|---|
| Sequence |
0- AGGGCAAUUCUGGCUGGGUCAUC -23
Get sequence
|
|---|
| Mature sequence |
Esc-Novel-39_3p |
| mirBase accession | None |
|---|
| Sequence |
38- UGCCUUGCCUUCUCUUGCCUUGG -61
Get sequence
|
|---|
