| MirGeneDB ID | Ovu-Novel-38-v2 |
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| Family name |
COL-NOVEL-38 (all species) |
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| Seed |
UUCAUCA |
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| Species |
Common octopus (Octopus vulgaris) |
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| MiRBase ID |
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| Paralogues |
Ovu-Novel-38-v1
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| Orthologues |
Esc-Novel-38-v2
Obi-Novel-38-v2
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| Node of Origin (locus) |
Coleoidea
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| Node of Origin (family) |
Coleoidea
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Genome context
(GCA_003957725.1_ASM395772v1_OVU) |
RXHP01067064.1: 772-832 [-]
Ensembl
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Precursor
(pre-Mir +30nt flank) |
CUGGAUGUUGAUCCAACAGAUAGAGCCAGUACAGCCUUGCAGAUGGUCAAAUACGUUUUAGGAAGACAUUUCAUCAUUCACAAGGCUGCACUGUCGCUGUCUACAUCAACAUUAGAGCCUU
Get precursor sequence
|
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| Structure | 10 20 30 40 50
CUGGAUGUUGAUCCAAC--| AGC A CA C ACGUUUU
AGAUAG CAGU CAGCCUUG GAUGGU AAAU \
UCUGUC GUCA GUCGGAAC UUACUA UUUA A
UUCCGAGAUUACAACUACA^ GCU C AC C CAGAAGG
. 110 100 90 80 70 |
|---|
| Deep sequencing |
Go to detailed chart
|
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| 3' NTU |
No
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| Motifs | CNNC at 3p(+17) |
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Tissue expression
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| Oc |
Oc |
Oc |
Oc |
Oc |
Oc |
Oc |
Oc |
Oc |
Oc |
Oc |
Oc |
Oc |
Oc |
Oc |
Oc |
Oc |
Oc |
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| Star sequence |
Ovu-Novel-38-v2_5p* |
| mirBase accession | None |
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| Sequence |
0- ACAGCCUUGCAGAUGGUCAAAUA -23
Get sequence
|
|---|
| Mature sequence |
Ovu-Novel-38-v2_3p |
| mirBase accession | None |
|---|
| Sequence |
38- UUUCAUCAUUCACAAGGCUGCAC -61
Get sequence
|
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