| MirGeneDB ID | Obi-Novel-38-v2 |
|---|
| Family name |
COL-NOVEL-38 (all species) |
|---|
| Seed |
UUCAUCA |
|---|
| Species |
California two-spot octopus (Octopus bimaculoides) |
|---|
| MiRBase ID |
|
|---|
| Paralogues |
Obi-Novel-38-v1
|
|---|
| Orthologues |
Esc-Novel-38-v2
Ovu-Novel-38-v2
|
|---|
| Node of Origin (locus) |
Coleoidea
|
|---|
| Node of Origin (family) |
Coleoidea
|
|---|
Genome context
(PRJNA270931_OBI) |
KQ416924: 379553-379613 [+]
Ensembl
|
|---|
Precursor
(pre-Mir +30nt flank) |
CUGGAUGUUGAUCCAACAGAUAGAGCCAGUACAGCCUUGCAGAUGGUCAAAUACGUUUUAGGAAGACAUUUCAUCAUUCACAAGGCUGCACUGUCGCUGUCUACAUCAACAUUAGAGCCUU
Get precursor sequence
|
|---|
| Structure | 10 20 30 40 50
CUGGAUGUUGAUCCAAC--| AGC A CA C ACGUUUU
AGAUAG CAGU CAGCCUUG GAUGGU AAAU \
UCUGUC GUCA GUCGGAAC UUACUA UUUA A
UUCCGAGAUUACAACUACA^ GCU C AC C CAGAAGG
. 110 100 90 80 70 |
|---|
| Deep sequencing |
Go to detailed chart
|
|---|
| 3' NTU |
No
|
|---|
| Motifs | CNNC at 3p(+17) |
|---|
Tissue expression
|
|
|---|
| Star sequence |
Obi-Novel-38-v2_5p* |
| mirBase accession | None |
|---|
| Sequence |
0- ACAGCCUUGCAGAUGGUCAAAUA -23
Get sequence
|
|---|
| Mature sequence |
Obi-Novel-38-v2_3p |
| mirBase accession | None |
|---|
| Sequence |
38- UUUCAUCAUUCACAAGGCUGCAC -61
Get sequence
|
|---|
